Escherichia coli O145:H28 16003 |
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Putative Escherichia coli O145:H28 16003 RM systems
Ref: Nakamura,K. et al. unpublished
REBASE ref # 33395
| Sequence length: | GenBank #: | |
| Chromosome: | 5,409,095 bp | AP024924 |
| plasmid pO145_16003: | 93,260 bp | AP024925 |
REBASE acronym: Eco16003
Org_num: 53843
All begin EC16003_, EC16003_p1-
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2376 | metal-dependent hydrolase | |||
| 2377 | R | EcoSO173ORF28895P (100% identity) | GATGNNNNNNTAC | Eco16003ORF2381P |
| 2378 | 620 aa hypothetical protein | |||
| 2379 | 227 aa hypothetical protein | |||
| 2380 | S | S.EcoSO173ORF28895P (100% identity) | GATGNNNNNNTAC | S.Eco16003ORF2381P |
| ??? | M | M.EcoE115ORF2574P (100% identity) | GATGNNNNNNTAC | M.Eco16003ORF2381P |
| 2383 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1547 | 65 aa hypothetical protein | |||
| 1548 | M | M.EcoE115ORF1522P (100% identity) | M.Eco16003ORF1548P | |
| 1549 | Shiga toxin 2 subunit A | |||
| 2482 | amino acid exporter for phenylalanine | |||
| 2483 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco16003DcmP |
| 2484 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco16003DcmP |
| 2485 | HD superfamily phosphohydrolase | |||
| 3857 | global DNA-binding transcriptional dual | |||
| 3858 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco16003ORF3858P |
| 3859 | 59 aa hypothetical protein | |||
| 3957 | D-ribulose-5-phosphate 3-epimerase | |||
| 3958 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco16003DamP |
| 3959 | cell division protein DamX | |||
| 4566 | 77 aa hypothetical protein | |||
| 4567 | M | M.SflFF35ORF20P (100% identity) | GGCC | M.Eco16003ORF4567P |
| 4568 | 330 aa hypothetical protein | |||
| 4995 | 678 aa hypothetical protein | |||
| 4996 | R | EcoE115ORF5147P (100% identity) | Eco16003ORF4996P | |
| 4997 | N-acetylneuraminate epimerase | |||
| 5003 | ATP-dependent helicase | |||
| ??? | RM | EcoE115ORF5155P (100% identity) | Eco16003ORF5004P | |
| plasmid pO145_16003 | ||||
| 56 | 308 aa hypothetical protein | |||
| 57 | M | M.EcopO26ORF185P (100% identity) | SAY | M.Eco16003ORF57P |
| 58 | 73 aa hypothetical protein | |||