Helicobacter pylori 3192 |
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Putative Helicobacter pylori 3192 RM systems
Ref: Jin,F. unpublished
REBASE ref # 33449
Complete sequence: 1,637,585 bp
GenBank #: CP086760
REBASE acronym: Hpy3192
Org_num: 54084
All begin LJN47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 390 | LPP20 family lipoprotein | |||
| 395 | S | S.HpySW05ORF7635P (95% identity) | S.Hpy3192ORF400P | |
| 400 | M | M.Hpyfe48ORF7700P (96% identity) | M.Hpy3192ORF400P | |
| 405 | R | HpyC101VIIP (95% identity) | Hpy3192ORF400P | |
| 410 | M48 family metallopeptidase | |||
| 3065 | RNA degradosome polyphosphate kinase | |||
| 3075 | S | S.HpyGU1CORFLP (99% identity) | S.Hpy3192ORF3080P | |
| 3080 | M | M.Hpyfe39ORF4985P (97% identity) | M.Hpy3192ORF3080P | |
| ??? | R | HpyK034ORF2230P (94% identity) | Hpy3192ORF3080P | |
| 3095 | motility associated factor glycosyltransferase | |||
| 7685 | 90 aa hypothetical protein | |||
| 7690 | S | S.HpySP402ORF7415P (97% identity) | GRTANNNNNNNTTTA | S.Hpy3192ORF7690P |
| 7695 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 720 aa hypothetical protein | |||
| 60 | RM | HpyKG4ORF7490P (77% identity) | Hpy3192ORF60P | |
| 65 | 176 aa hypothetical protein | |||
| 140 | outer membrane protein | |||
| 145 | R | HpyPE105IVP (96% identity) | CCATC | Hpy3192ORF150P |
| 150 | M | M2.HpyQ35ORFDP (99% identity) | CCATC | M1.Hpy3192ORF150P |
| 155 | M | M1.HpyIS6ORF7395P (99% identity) | CCATC | M2.Hpy3192ORF150P |
| 160 | LptF/LptG family permease | |||
| 285 | ComF family protein | |||
| 290 | R | HpyK037IXP (99% identity) | GGATG | Hpy3192ORF295P |
| 295 | M | M2.HpyHK840ORFKP (99% identity) | GGATG | M1.Hpy3192ORF295P |
| 300 | M | M1.HpyK036XIII (99% identity) | GGATG | M2.Hpy3192ORF295P |
| ??? | C | C.Hpyfe73ORF275P (100% identity) | C.Hpy3192ORF295P | |
| 310 | DNA polymerase I | |||
| 485 | 67 aa hypothetical protein | |||
| 490 | M | M.HpySW24V (98% identity) | TGCA | M.Hpy3192ORF490P |
| 495 | R | HpyUBN18ORFZP (100% identity) | TGCA | Hpy3192ORF490P |
| 500 | cytochrome c1 | |||
| 995 | agmatine/peptidylarginine deiminase | |||
| 1000 | M | M1.HpyKH9ORFLP (99% identity) | CCTC | M1.Hpy3192ORF1000P |
| 1005 | M | M2.HpyKH28ORFLP (98% identity) | CCTC | M2.Hpy3192ORF1000P |
| 1010 | R | HpyIN3VIP (90% identity) | CCTC | Hpy3192ORF1000P |
| 1015 | site-specific DNA-methyltransferase | |||
| 1010 | restriction endonuclease | |||
| 1015 | M | M.HpyOki112ORF515P (98% identity) | GTSAC | M.Hpy3192ORF1015P |
| 1020 | R | HpyGE4VIIIP (99% identity) | GTSAC | Hpy3192ORF1015P |
| 1025 | sodium/proline symporter PutP | |||
| 1225 | 321 aa hypothetical protein | |||
| 1230 | M | M.HpyJSHR31ORF13330P (97% identity) | GATC | M.Hpy3192ORF1230P |
| 1235 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 2200 | exodeoxyribonuclease VII large subunit | |||
| 2205 | M | M.HpyID10IX (96% identity) | TCGA | M.Hpy3192ORF2205P |
| 2210 | 200 aa hypothetical protein | |||
| 2210 | 200 aa hypothetical protein | |||
| 2215 | R | HpyKG6VIP (93% identity) | CCGG | Hpy3192ORF2220P |
| 2220 | M | M.HpyPF16IV (98% identity) | CCGG | M.Hpy3192ORF2220P |
| 2225 | AAA family ATPase | |||
| 2455 | polysaccharide deacetylase | |||
| 2460 | R | HpyK51ORF313P (98% identity) | CTNAG | Hpy3192ORF2465P |
| 2465 | M | M.Hpyfe1ORF5730P (100% identity) | CTNAG | M.Hpy3192ORF2465P |
| 2470 | 125 aa hypothetical protein | |||
| 3160 | Hop family outer membrane protein HopJ/HopK | |||
| 3165 | M | M.HpyK021II (97% identity) | ATTAAT | M.Hpy3192ORF3165P |
| ??? | R | HpyK021IIP (89% identity) | Hpy3192ORF3165P | |
| 3180 | lipopolysaccharide heptosyltransferase family | |||
| 3185 | translational GTPase TypA | |||
| 3190 | M | M.Hpy52ORF465P (99% identity) | ACGT | M.Hpy3192ORF3190P |
| 3195 | R | HpyL035ORF2240P (95% identity) | ACGT | Hpy3192ORF3190P |
| 3200 | catalase | |||
| 3295 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3300 | M | M.HpyL018X (96% identity) | GTAC | M.Hpy3192ORF3300P |
| 3305 | R | HpyK154ORF3410P (92% identity) | GTAC | Hpy3192ORF3300P |
| 3310 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 5310 | flagellar hook protein FlgE | |||
| 5315 | R | HpyOK44ORFXP (92% identity) | GTNNAC | Hpy3192ORF5320P |
| 5320 | M | M.HpyT022XII (98% identity) | GTNNAC | M.Hpy3192ORF5320P |
| 5325 | ATP-dependent helicase | |||
| 5990 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5995 | M | M.HpySP302XIII (99% identity) | TCNNGA | M.Hpy3192ORF5995P |
| 6000 | R | HpyC107IIP (98% identity) | TCNNGA | Hpy3192ORF5995P |
| 6005 | Laminin subunit alpha-2 precursor | |||
| 6195 | 144 aa hypothetical protein | |||
| 6200 | M | M.HpyIN3XV (98% identity) | GCGC | M.Hpy3192ORF6200P |
| 6205 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6660 | HAD family hydrolase | |||
| 6665 | M | M.HpyT010I (96% identity) | CATG | M.Hpy3192ORF6665P |
| 6670 | R | HpyKG7IP (97% identity) | CATG | Hpy3192ORF6665P |
| 6675 | serine O-acetyltransferase | |||
| 7390 | S41 family peptidase | |||
| 7395 | R | HpyKH32ORFLP (95% identity) | GANTC | Hpy3192ORF7400P |
| 7400 | M | M.Hpyfe112ORF7265P (99% identity) | GANTC | M.Hpy3192ORF7400P |
| 7405 | N-6 DNA methylase | |||
| 7400 | site-specific DNA-methyltransferase | |||
| 7405 | RM | HpyQ52ORFZP (88% identity) | Hpy3192ORF7405P | |
| 7410 | carboxylating nicotinate-nucleotide | |||
| 7460 | copper response regulator transcription factor | |||
| 7465 | R | HpyF20JORF35P (98% identity) | GAAGA | Hpy3192ORF7470P |
| 7470 | M | M2.HpyJA112VIII (100% identity) | GAAGA | M1.Hpy3192ORF7470P |
| 7475 | M | M2.HpyLI01II (100% identity) | GAAGA | M2.Hpy3192ORF7470P |
| 7480 | restriction endonuclease subunit R | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyCHN1ORF7290P (97% identity) | M.Hpy3192ORF40P | |
| 50 | R | Hpyfe82ORF40P (95% identity) | Hpy3192ORF40P | |
| 55 | 720 aa hypothetical protein | |||
| 7535 | DNA/RNA non-specific endonuclease | |||
| 7540 | M | M.HpyHPYORF7590P (95% identity) | M.Hpy3192ORF7540P | |
| 7545 | R | HpyL009ORF6720P (91% identity) | Hpy3192ORF7540P | |
| 7550 | biotin synthase | |||