Escherichia coli PJ-T13 |
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Putative Escherichia coli PJ-T13 RM systems
Ref: Chang,M.-X. and Jiang,H.-X. unpublished
REBASE ref # 29037
Complete sequence: 4,935,193 bp
GenBank #: CP087110
REBASE acronym: EcoPJT13
Org_num: 53869
All begin LM520_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18855 | adenine/cytosine-specific restriction | |||
| 18860 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | EcoPJT13ORF18865P |
| 18865 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoPJT13ORF18865P |
| 18870 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoPJT13ORF18865P |
| 18875 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1665 | DUF2556 family protein | |||
| 1670 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoPJT13ORF1670P |
| 1675 | DNA-binding transcriptional regulator Fis | |||
| 8185 | phosphohydrolase | |||
| 8190 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoPJT13DcmP |
| 8195 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoPJT13DcmP |
| 8200 | drug/metabolite exporter YedA | |||
| 22785 | thermonuclease family protein | |||
| 22790 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoPJT13ORF22790P |
| 22795 | 55 aa hypothetical protein | |||
| 23345 | 48 aa hypothetical protein | |||
| 23350 | M | M.YpsF1ORFBP (100% identity) | M.EcoPJT13ORF23350P | |
| 23355 | 202 aa hypothetical protein | |||
| 23485 | DNA-binding protein | |||
| 23490 | M | M.YpsF1ORFDP (95% identity) | M.EcoPJT13ORF23490P | |
| 23495 | 284 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12410 | NADP-dependent isocitrate dehydrogenase | |||
| 12415 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoPJT13ORF12415P |
| 12420 | site-specific DNA recombinase | |||
| 18850 | GTPase | |||
| 18855 | R | SenHNK130MrrP (100% identity) | EcoPJT13MrrP | |
| 18860 | type I restriction-modification system | |||
| 18875 | endoribonuclease SymE | |||
| 18880 | R | SenHNK130McrBP (100% identity) | EcoPJT13McrBP | |
| 18885 | R | SenHNK130McrCP (100% identity) | EcoPJT13McrCP | |
| 18890 | 978 aa hypothetical protein | |||