Escherichia coli 4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 4 RM systems
Ref: Allue-Guardia,A. et al. unpublished
REBASE ref # 33270
| Sequence length: | GenBank #: | |
| Chromosome: | 4,907,913 bp | CP045209 |
| plasmid pCol-4: | 9,058 bp | CP045212 |
REBASE acronym: Eco4
Org_num: 53268
All begin GC226_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2930 | 61 aa hypothetical protein | |||
| 2935 | S | S.Ecostr10ORF18570P (100% identity) | S.Eco4ORF2940P | |
| 2940 | M | M.Ecostr10ORF18570P (100% identity) | M.Eco4ORF2940P | |
| 2945 | DUF45 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2980 | BREX-1 system phosphatase PglZ type A | |||
| 2985 | RM | Ecostr10ORF18620P (99% identity) | Eco4ORF2985P | |
| 2990 | BREX system P-loop protein BrxC | |||
| 3015 | 332 aa hypothetical protein | |||
| 3020 | R | Ecostr10ORF18645P (100% identity) | Eco4ORF3020P | |
| 3025 | HNH endonuclease | |||
| 7775 | IS1 family transposase | |||
| 7780 | R | Eal161ORF21900P (100% identity) | GGTACC | Eco4ORF7785P |
| 7785 | M | M.EcoE1728ORF22495P (100% identity) | GGTACC | M.Eco4ORF7785P |
| 7790 | recombinase family protein | |||
| 7795 | endonuclease | |||
| 7800 | 151 aa hypothetical protein | |||
| 7805 | C | C.Eal161ORF21900P (100% identity) | C.Eco4ORF7785P | |
| 7810 | 132 aa hypothetical protein | |||
| 9485 | TrmB family transcriptional regulator | |||
| 9490 | M | M.Eco1588ORF13390P (99% identity) | M.Eco4ORF9490P | |
| 9510 | Shiga toxin Stx2c subunit A | |||
| 9970 | PerC family transcriptional regulator | |||
| 9975 | M | M.Ecostr10ORF1530P (100% identity) | GATC | M.Eco4ORF9975P |
| 9980 | LexA family transcriptional regulator | |||
| 10865 | TrmB family transcriptional regulator | |||
| 10870 | M | M.Ecos154ORF3040P (100% identity) | M.Eco4ORF10870P | |
| 10885 | cell envelope integrity protein TolA | |||
| 14340 | drug/metabolite exporter YedA | |||
| 14345 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco4DcmP |
| 14350 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco4DcmP |
| 14355 | phosphohydrolase | |||
| 21520 | DNA-binding transcriptional regulator Fis | |||
| 21525 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco4ORF21525P |
| 21530 | DUF2556 domain-containing protein | |||
| 22085 | ribulose-phosphate 3-epimerase | |||
| 22090 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4DamP |
| 22095 | cell division protein DamX | |||
| plasmid pCol-4 | ||||
| 25460 | MbeD family mobilization/exclusion protein | |||
| 25465 | R | SsoI (100% identity) | GAATTC | Eco4ORF25470P |
| 25470 | M | M.SsoI (100% identity) | GAATTC | M.Eco4ORF25470P |
| 25475 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10180 | site-specific DNA recombinase | |||
| 10185 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco4ORF10185P |
| 10190 | isocitrate dehydrogenase | |||