Bifidobacterium bifidum YIT 10347 |
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Putative Bifidobacterium bifidum YIT 10347 RM systems
Ref: Ishikawa,E. et al. iScience 103363 (2021) In press
REBASE ref # 33208
Complete sequence: 2,149,912 bp
GenBank #: AP024712
REBASE acronym: Bbi10347
Org_num: 53051
All begin BF1_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 355 | 65 aa hypothetical protein | |||
| 356 | R | BloLC67ORFDP (32% identity) | CTGCAG | R1.Bbi10347ORF357P |
| 357 | M | M.BloLC67ORFEP (99% identity) | CTGCAG | M.Bbi10347ORF357P |
| 358 | R | Bbi2010ORF16P (100% identity) | CTGCAG | R2.Bbi10347ORF357P |
| 359 | 360 aa Hypothetical protein BBPR_0018 | |||
| 454 | phage integrase (truncated) | |||
| 455 | R | BbiBF3ORF180P (100% identity) | GRCGYC | Bbi10347ORF456P |
| 456 | M | M.Bbi3115ORF1711P (100% identity) | GRCGYC | M.Bbi10347ORF456P |
| 457 | Cell wall lytic enzyme (truncated) | |||
| 811 | 16S RNA methylase | |||
| 812 | R | BbiS6ORF8015P (100% identity) | C | Bbi10347ORF812P |
| 813 | GTP-binding protein | |||
| 949 | Integrase/recombinase (XerD/RipX family) | |||
| 950 | M | M.PmeBin303ORFDP (100% identity) | CTCGAG | M.Bbi10347ORF950P |
| 951 | R | PmeBin303ORFDP (100% identity) | CTCGAG | Bbi10347ORF950P |
| 952 | 290 aa hypothetical protein | |||
| 1027 | Transposase and inactivated derivatives | |||
| 1028 | R | Bbi3115ORFAP (100% identity) | Bbi10347ORF1029P | |
| 1029 | M | M.Bbi3115ORFAP (100% identity) | M.Bbi10347ORF1029P | |
| 1030 | transposase of IS1353 (truncated) | |||
| 1046 | Transposase part B | |||
| ??? | M | M.PmeBin303ORFAP (100% identity) | GAATTC | M.Bbi10347ORF1047P |
| 1048 | Pyrazinamidase/Nicotinamidase | |||
| 1391 | HipA domain | |||
| 1392 | M | M.BbiS17ORF1197P (91% identity) | M.Bbi10347ORF1392P | |
| 1393 | 240 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 443 | 166 aa hypothetical protein | |||
| 444 | R | Bfi002ORF4175P (99% identity) | Bbi10347ORF444P | |
| 445 | NTP pyrophosphohydrolase with NUDIX domain | |||