Helicobacter pylori FDAARGOS_1563 |
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Putative Helicobacter pylori FDAARGOS_1563 RM systems
Ref: Sproer,C. et al. unpublished
REBASE ref # 33120
Complete sequence: 1,652,995 bp
GenBank #: CP085947
REBASE acronym: Hpy1563
Org_num: 54093
All begin LK447_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2560 | cagY like domain protein | |||
| 2565 | S | S.HpyGORF1456P (100% identity) | S.Hpy1563ORF2570P | |
| 2570 | M | M.HpyGORF1456P (100% identity) | M.Hpy1563ORF2570P | |
| 2575 | R | HpyGORF1456P (100% identity) | Hpy1563ORF2570P | |
| 2580 | M48 family metallopeptidase | |||
| 5080 | RNA degradosome polyphosphate kinase | |||
| 5090 | S | S.HpyH021ORF2155P (99% identity) | CAGNNNNNTC | S.Hpy1563ORF5095P |
| 5095 | M | M.HpyGORF420P (98% identity) | CAGNNNNNTC | M.Hpy1563ORF5095P |
| 5100 | R | HpySW25ORF2150P (90% identity) | CAGNNNNNTC | Hpy1563ORF5095P |
| 5105 | motility associated factor glycosyltransferase | |||
| 6740 | outer membrane beta-barrel protein HofF | |||
| 6745 | S | S.HpyGORF746P (100% identity) | CTANNNNNNNTTG | S.Hpy1563ORF6745P |
| 6750 | cadmium-translocating P-type ATPase | |||
| 7040 | hydroxyethylthiazole kinase | |||
| 7045 | R | HpyGORF806P (100% identity) | CTANNNNNNNNTTG | Hpy1563ORF7055P |
| 7050 | S | S.HpyGORF806P (100% identity) | CTANNNNNNNNTTG | S.Hpy1563ORF7055P |
| 7055 | M | M.HpyGORF806P (100% identity) | CTANNNNNNNNTTG | M.Hpy1563ORF7055P |
| 7060 | type I restriction endonuclease subunit M | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 355 | acetyl-CoA carboxylase biotin carboxylase | |||
| 360 | M | M.HpyGI (100% identity) | TCNNGA | M.Hpy1563ORF360P |
| 365 | R | HpyU409XIVP (100% identity) | TCNNGA | Hpy1563ORF360P |
| 370 | Laminin subunit alpha-2 precursor | |||
| 545 | 144 aa hypothetical protein | |||
| 550 | M | M.HpyGIII (100% identity) | GCGC | M.Hpy1563ORF550P |
| 555 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1020 | HAD family hydrolase | |||
| 1025 | M | M.HpyGORF1155P (100% identity) | CATG | M.Hpy1563ORF1025P |
| 1030 | IceA2 protein | |||
| 1405 | glycosyltransferase family 9 protein | |||
| 1410 | M | M.HpyGORF1231P (100% identity) | GATATC | M.Hpy1563ORF1410P |
| ??? | R | HpyI012ORF6295P (100% identity) | GATATC | Hpy1563ORF1410P |
| 1425 | 68 aa hypothetical protein | |||
| 1760 | DNA methyltransferase | |||
| 1765 | R | HpyPR08IXP (100% identity) | GANTC | Hpy1563ORF1770P |
| 1770 | M | M.HpyGORF1301P (100% identity) | GANTC | M.Hpy1563ORF1770P |
| 1775 | N-6 DNA methylase | |||
| 1770 | site-specific DNA-methyltransferase | |||
| 1775 | RM | HpyGORF1302P (100% identity) | Hpy1563ORF1775P | |
| 1780 | carboxylating nicotinate-nucleotide | |||
| 2250 | DNA polymerase I | |||
| 2255 | S | S.HpyGORF1395P (100% identity) | S.Hpy1563ORF2260P | |
| 2260 | RM | HpyGORF1395P (100% identity) | CAANNNNNNTTG | Hpy1563ORF2260P |
| 2265 | ComF family protein | |||
| 2390 | LptF/LptG family permease | |||
| 2395 | M | M1.HpyGORF1422P (100% identity) | CCATC | M1.Hpy1563ORF2395P |
| 2400 | M | M2.HpyGORF1422P (100% identity) | CCATC | M2.Hpy1563ORF2395P |
| 2405 | R | HpyGORF1422P (100% identity) | CCATC | Hpy1563ORF2395P |
| 2410 | outer membrane protein | |||
| 2485 | SocA family protein | |||
| 2490 | RM | HpyGORF1441P (100% identity) | Hpy1563ORF2490P | |
| 2495 | type III restriction-modification system | |||
| 2650 | 67 aa hypothetical protein | |||
| 2655 | M | M.HpyGII (100% identity) | TGCA | M.Hpy1563ORF2655P |
| 2660 | R | HpySP17VP (99% identity) | TGCA | Hpy1563ORF2655P |
| 2665 | cytochrome c1 | |||
| 3175 | agmatine/peptidylarginine deiminase | |||
| 3180 | M | M1.HpyGORF44P (100% identity) | CCTC | M1.Hpy1563ORF3180P |
| 3185 | M | M2.HpyP105VP (98% identity) | CCTC | M2.Hpy1563ORF3180P |
| 3190 | R | HpyGE21VP (95% identity) | CCTC | Hpy1563ORF3180P |
| 3195 | restriction endonuclease | |||
| 3190 | HNH endonuclease | |||
| 3195 | R | HpyGORF49P (100% identity) | CCTTC | Hpy1563ORF3200P |
| 3200 | M | M.HpyGORF49P (100% identity) | CCTTC | M.Hpy1563ORF3200P |
| 3205 | sodium/proline symporter PutP | |||
| 3380 | ACP S-malonyltransferase | |||
| 3390 | R | HpyG012IXP (95% identity) | GATC | Hpy1563ORF3395P |
| 3395 | M | M.HpyGORF85P (100% identity) | GATC | M.Hpy1563ORF3395P |
| 3400 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 4185 | exodeoxyribonuclease VII large subunit | |||
| 4190 | M | M.HpyGORF239P (100% identity) | TCGA | M.Hpy1563ORF4190P |
| 4195 | 204 aa hypothetical protein | |||
| 4195 | 204 aa hypothetical protein | |||
| 4200 | R | HpyGORF242P (89% identity) | CCGG | Hpy1563ORF4205P |
| 4205 | M | M.HpyGORF242P (96% identity) | CCGG | M.Hpy1563ORF4205P |
| 4210 | AAA family ATPase | |||
| 4445 | polysaccharide deacetylase | |||
| 4450 | R | HpyGORF291P (100% identity) | CTNAG | Hpy1563ORF4455P |
| 4455 | M | M.HpyGORF291P (100% identity) | CTNAG | M.Hpy1563ORF4455P |
| 4460 | 122 aa hypothetical protein | |||
| 5175 | Hop family outer membrane protein HopJ/HopK | |||
| 5180 | M | M.HpyGORF436P (100% identity) | ATTAAT | M.Hpy1563ORF5180P |
| 5185 | glycosyltransferase family 9 protein | |||
| 5190 | translational GTPase TypA | |||
| 5195 | M | M.HpyGORF439P (100% identity) | ACNGT | M.Hpy1563ORF5195P |
| 5200 | R | Hpy030ORF2260P (99% identity) | ACNGT | Hpy1563ORF5195P |
| 5205 | DNA cytosine methyltransferase | |||
| 5200 | GIY-YIG nuclease family protein | |||
| 5205 | M | M.HpyGORF441P (100% identity) | ACGT | M.Hpy1563ORF5205P |
| 5210 | R | Hpy030ORF2270P (100% identity) | ACGT | Hpy1563ORF5205P |
| 5215 | catalase | |||
| 5305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5310 | M | M.HpyGORF462P (100% identity) | GTAC | M.Hpy1563ORF5310P |
| 5315 | R | HpyNSH57I (98% identity) | GTAC | Hpy1563ORF5310P |
| 5320 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 6885 | osmoprotection protein | |||
| 6890 | R | HpySP507IVP (100% identity) | CGWCG | Hpy1563ORF6895P |
| 6895 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy1563ORF6895P |
| 6900 | ABC transporter permease/substrate-binding | |||
| 7335 | flagellar hook protein FlgE | |||
| 7340 | R | HpyGORF861P (94% identity) | GTNNAC | Hpy1563ORF7345P |
| 7345 | M | M.HpyGORF861P (100% identity) | GTNNAC | M.Hpy1563ORF7345P |
| 7350 | ATP-dependent helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1830 | copper response regulator transcription factor | |||
| 1835 | M | M.HpyGORF1314P (100% identity) | M.Hpy1563ORF1835P | |
| 1840 | R | HpyGORF1314P (100% identity) | Hpy1563ORF1835P | |
| 1845 | rod shape-determining protein MreC | |||
| 1890 | DNA/RNA non-specific endonuclease | |||
| 1895 | M | M.HpyHPYORF7590P (95% identity) | M.Hpy1563ORF1895P | |
| 1900 | R | HpyGORF1327P (95% identity) | Hpy1563ORF1895P | |
| 1905 | biotin synthase | |||
| 2490 | Eco57I restriction-modification methylase | |||
| 2495 | R | HpyGORF1443P (100% identity) | Hpy1563ORF2500P | |
| 2500 | M | M.HpyGORF1443P (100% identity) | M.Hpy1563ORF2500P | |
| 2505 | ATP-dependent DNA helicase RecG | |||
| 5770 | 2-oxoacid:acceptor oxidoreductase family | |||
| 5775 | R | HpyGORF553P (100% identity) | GCAG | Hpy1563ORF5780P |
| 5780 | M | M.HpyGORF553P (100% identity) | GCAG | M.Hpy1563ORF5780P |
| 5785 | 54 aa hypothetical protein | |||