Prevotella copri DSM 18205 FDAARGOS_1573 |
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Putative Prevotella copri DSM 18205 FDAARGOS_1573 RM systems
Ref: Carlson,P. et al. unpublished
REBASE ref # 33089
Complete sequence: 3,325,535 bp
GenBank #: CP085932
REBASE acronym: Pca1573
Org_num: 54870
All begin LK433_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4920 | 111 aa hypothetical protein | |||
| 4925 | R | PcoORF5694P (100% identity) | Pca1573ORF4930P | |
| 4930 | M | M.PcoORF5694P (100% identity) | M.Pca1573ORF4930P | |
| 4935 | S | S3.PcoORF5694P (100% identity) | S1.Pca1573ORF4930P | |
| 4940 | S | S2.PcoORF5694P (100% identity) | S2.Pca1573ORF4930P | |
| 4945 | tyrosine-type recombinase/integrase | |||
| 4950 | S | S1.PcoORF5694P (100% identity) | S3.Pca1573ORF4930P | |
| 4955 | 104 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4300 | 266 aa hypothetical protein | |||
| 4305 | R | PcoORF314P (100% identity) | Pca1573ORF4305P | |
| 4310 | 168 aa hypothetical protein | |||
| 4370 | DUF4143 domain-containing protein | |||
| 4375 | R | PcoORF6737P (100% identity) | Pca1573ORF4380P | |
| 4380 | M | M.PcoORF6737P (100% identity) | M.Pca1573ORF4380P | |
| 4385 | transposase | |||
| 4840 | IS982 family transposase | |||
| 4845 | C | C.PcoORF6850P (100% identity) | C.Pca1573ORF4850P | |
| 4850 | M | M.PcoORF6850P (100% identity) | M1.Pca1573ORF4850P | |
| 4855 | R | PcoORF6850P (100% identity) | Pca1573ORF4850P | |
| 4860 | helix-turn-helix transcriptional regulator | |||
| 4865 | M | M.PcoORF6853P (100% identity) | M2.Pca1573ORF4850P | |
| 4870 | RloB family protein | |||
| 5440 | Rpn family recombination-promoting | |||
| 5445 | RM | PcoI (100% identity) | GAACNNNNNNTCC | Pca1573ORF5445P |
| 5450 | GIY-YIG nuclease family protein | |||
| 5825 | site-specific DNA-methyltransferase | |||
| 5830 | M | M.PcoORF4391P (100% identity) | M.Pca1573ORF5830P | |
| 5835 | phospholipase D family protein | |||
| 5840 | 144 aa hypothetical protein | |||
| 5845 | R | PcoORF4391P (100% identity) | Pca1573ORF5830P | |
| 5850 | DNA-binding protein | |||
| 6765 | DEAD/DEAH box helicase family protein | |||
| 6770 | M | M.PcoORFBP (100% identity) | M.Pca1573ORF6770P | |
| 6775 | 183 aa hypothetical protein | |||
| 7420 | DUF1232 domain-containing protein | |||
| 7425 | M | M.PcoORF4762P (100% identity) | M.Pca1573ORF7425P | |
| 7430 | R | PcoORF4762P (100% identity) | Pca1573ORF7425P | |
| 7435 | HNH endonuclease | |||
| 8275 | Fic family protein | |||
| 8280 | M | M2.PcoORF6613P (97% identity) | M1.Pca1573ORF8280P | |
| 8285 | M | M1.PcoORF6613P (100% identity) | M2.Pca1573ORF8280P | |
| 8290 | RM | PcoORF6612P (100% identity) | Pca1573ORF8280P | |
| 8295 | 146 aa hypothetical protein | |||
| 9320 | DUF6078 family protein | |||
| 9325 | RM | PcoORF3780BP (100% identity) | Pca1573ORF9325P | |
| 9330 | restriction endonuclease subunit M | |||
| 10310 | 251 aa hypothetical protein | |||
| 10315 | M | M.Pco18205ORF3705P (100% identity) | M.Pca1573ORF10315P | |
| 10320 | 152 aa hypothetical protein | |||
| 10555 | DUF2442 domain-containing protein | |||
| 10560 | R | PcoORF4066P (100% identity) | Pca1573ORF10565P | |
| 10565 | M | M1.PcoORF4066P (100% identity) | M1.Pca1573ORF10565P | |
| 10570 | M | M2.PcoORF4066P (100% identity) | M2.Pca1573ORF10565P | |
| 10575 | C | C.PcoORF4066P (100% identity) | C.Pca1573ORF10565P | |
| 10580 | 45 aa hypothetical protein | |||
| 11080 | DEAD/DEAH box helicase family protein | |||
| 11085 | RM | PcoORF4179P (99% identity) | Pca1573ORF11085P | |
| 11090 | 76 aa hypothetical protein | |||
| 11680 | DUF5640 domain-containing protein | |||
| 11685 | R | PcoORF4317P (100% identity) | Pca1573ORF11690P | |
| 11690 | M | M.PcoORF4317P (100% identity) | M.Pca1573ORF11690P | |
| 11695 | 47 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5235 | 93 aa hypothetical protein | |||
| 5240 | M | M.PcoORF5622P (97% identity) | M.Pca1573ORF5240P | |
| 5245 | R | PcoORF5622P (100% identity) | Pca1573ORF5240P | |
| 5250 | 71 aa hypothetical protein | |||
| 5735 | 393 aa hypothetical protein | |||
| 5740 | M | M.PcoORF4371P (100% identity) | M.Pca1573ORF5740P | |
| 5745 | R | PcoORF4371P (100% identity) | Pca1573ORF5740P | |
| 5755 | 63 aa hypothetical protein | |||
| 5820 | 275 aa hypothetical protein | |||
| 5825 | M | M.PcoORF4390P (100% identity) | M.Pca1573ORF5825P | |
| 5830 | DNA adenine methylase | |||
| 7235 | DEAD/DEAH box helicase family protein | |||
| 7240 | R | PcoORF4722P (100% identity) | Pca1573ORF7245P | |
| 7245 | M | M.PcoORF4722P (100% identity) | M.Pca1573ORF7245P | |
| 7250 | AAA family ATPase | |||
| 9735 | 70 aa hypothetical protein | |||
| 9740 | M | M.PcoORF3884P (100% identity) | M.Pca1573ORF9740P | |
| 9745 | R | PcoORF3884P (100% identity) | Pca1573ORF9740P | |
| 9750 | ATP-binding protein | |||
| 11990 | DUF86 domain-containing protein | |||
| 11995 | R | PcoORF3677P (100% identity) | Pca1573ORF12000P | |
| 12000 | M | M.PcoORF3677P (100% identity) | M.Pca1573ORF12000P | |
| 12005 | DEAD/DEAH box helicase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6210 | 407 aa hypothetical protein | |||
| 6215 | R | PcoMcrC2P (100% identity) | Pca1573McrC2P | |
| 6220 | R | PcoMcrB2P (100% identity) | Pca1573McrB2P | |
| 6225 | 77 aa hypothetical protein | |||
| 7490 | transposase | |||
| 7495 | R | PcoMcrC3P (100% identity) | Pca1573McrC3P | |
| 7500 | R | PcoMcrB3P (100% identity) | Pca1573McrB3P | |
| 7505 | 155 aa hypothetical protein | |||
| 9285 | 55 aa hypothetical protein | |||
| 9290 | R | PcoMcrCP (100% identity) | Pca1573McrC4P | |
| 9295 | R | PcoMcrBP (100% identity) | Pca1573McrB4P | |
| 11230 | excinuclease ABC subunit UvrA | |||
| 11235 | R | Pco18205McrC4P (100% identity) | Pca1573McrCP | |
| 11240 | R | Pco18205McrB4P (90% identity) | Pca1573McrBP | |
| 11245 | PDDEXK nuclease domain-containing protein | |||