Helicobacter pylori FDAARGOS_1601 |
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Putative Helicobacter pylori FDAARGOS_1601 RM systems
Ref: Sproer,C. et al. unpublished
REBASE ref # 33120
Complete sequence: 1,635,994 bp
GenBank #: CP085923
REBASE acronym: Hpy1601
Org_num: 54094
All begin LK454_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 735 | RNA degradosome polyphosphate kinase | |||
| 745 | S | S.Hpy17874ORF2469P (100% identity) | GACNNNNNTTA | S.Hpy1601ORF750P |
| 750 | M | M.Hpy17874ORF2469P (100% identity) | GACNNNNNTTA | M.Hpy1601ORF750P |
| 755 | R | Hpy17874ORF2469P (95% identity) | GACNNNNNTTA | Hpy1601ORF750P |
| 760 | IS200/IS605-like element IS605 family | |||
| 2170 | outer membrane beta-barrel protein HofF | |||
| 2175 | S | S.HpyG012ORF3745P (97% identity) | CTANNNNNNNNTTC | S.Hpy1601ORF2175P |
| 2180 | cadmium-translocating P-type ATPase | |||
| 2455 | hydroxyethylthiazole kinase | |||
| 2460 | R | Hpy17874ORF5965P (100% identity) | Hpy1601ORF2470P | |
| 2465 | S | S.Hpy72ORF791P (95% identity) | S.Hpy1601ORF2470P | |
| 2470 | M | M.Hpy17874ORF3194P (91% identity) | M.Hpy1601ORF2470P | |
| 2475 | type I restriction endonuclease | |||
| 6025 | cag pathogenicity island protein | |||
| 6030 | S | S.Hpy17874ORF4174P (100% identity) | TCTANNNNNNNTTTA | S.Hpy1601ORF6035P |
| 6035 | M | M.Hpy17874ORF4174P (100% identity) | TCTANNNNNNNTTTA | M.Hpy1601ORF6035P |
| 6040 | R | Hpy17874ORF4174P (100% identity) | TCTANNNNNNNTTTA | Hpy1601ORF6035P |
| 6045 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | polysaccharide deacetylase | |||
| 95 | R | HpyI026ORF1565P (100% identity) | CTNAG | Hpy1601ORF100P |
| 100 | M | M.Hpy17874ORF5280P (100% identity) | CTNAG | M.Hpy1601ORF100P |
| 105 | 122 aa hypothetical protein | |||
| 1555 | (Fe-S)-binding protein | |||
| 1560 | RM | Hpy17874ORF6237P (100% identity) | Hpy1601ORF1560P | |
| 1565 | 131 aa hypothetical protein | |||
| 1655 | 3-5 exonuclease | |||
| 1660 | M | M.HpyI012VIII (100% identity) | CCNNGG | M.Hpy1601ORF1660P |
| 1665 | R | HpyI012VIIIP (100% identity) | CCNNGG | Hpy1601ORF1660P |
| 1670 | 3-5 exonuclease | |||
| 2755 | flagellar hook protein FlgE | |||
| 2760 | R | Hpy17874ORF2549P (100% identity) | GTNNAC | Hpy1601ORF2765P |
| 2765 | M | M.Hpy17874ORF2549P (99% identity) | GTNNAC | M.Hpy1601ORF2765P |
| 2770 | ATP-dependent helicase | |||
| 3400 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3405 | M | M.HpyP008XI (99% identity) | TCNNGA | M.Hpy1601ORF3405P |
| 3410 | R | Hpy17874ORF470P (100% identity) | TCNNGA | Hpy1601ORF3405P |
| 3415 | Laminin subunit alpha-2 precursor | |||
| 3585 | catalase | |||
| 3590 | R | Hpy17874ORF7154P (100% identity) | ACGT | Hpy1601ORF3595P |
| 3595 | M | M.Hpy17874ORF7154P (100% identity) | ACGT | M.Hpy1601ORF3595P |
| 3600 | GIY-YIG nuclease family protein | |||
| 3595 | DNA cytosine methyltransferase | |||
| 3600 | R | HpyC61XP (98% identity) | ACNGT | Hpy1601ORF3605P |
| 3605 | M | M.Hpy17874ORF7164P (100% identity) | ACNGT | M.Hpy1601ORF3605P |
| 3610 | translational GTPase TypA | |||
| 3615 | glycosyltransferase family 9 protein | |||
| 3620 | M | M.Hpy17874ORF7184P (100% identity) | ATTAAT | M.Hpy1601ORF3620P |
| 3625 | Hop family outer membrane protein HopJ/HopK | |||
| 3855 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| ??? | R | Hpy17874ORF7512P (100% identity) | GTAC | Hpy1601ORF3865P |
| 3865 | M | M.Hpy17874ORF7512BP (100% identity) | GTAC | M.Hpy1601ORF3865P |
| 3870 | 61 aa hypothetical protein | |||
| 3965 | 144 aa hypothetical protein | |||
| 3970 | M | M.HpyI012XVI (99% identity) | M.Hpy1601ORF3970P | |
| 3975 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4450 | HAD family hydrolase | |||
| 4455 | M | M.HpyI012I (100% identity) | CATG | M.Hpy1601ORF4455P |
| 4460 | IceA2 protein | |||
| 4840 | glycosyltransferase family 9 protein | |||
| 4845 | M | M.Hpy17874ORF1438P (100% identity) | GATATC | M.Hpy1601ORF4845P |
| 4850 | R | HpyJO6IXP (100% identity) | GATATC | Hpy1601ORF4845P |
| 4855 | 68 aa hypothetical protein | |||
| 5205 | DNA methyltransferase | |||
| 5210 | R | Hpy17874ORF7027P (100% identity) | GANTC | Hpy1601ORF5215P |
| 5215 | M | M.Hpy17874ORF7027P (100% identity) | GANTC | M.Hpy1601ORF5215P |
| 5220 | DNA methyltransferase | |||
| 5215 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpySW26ORF6660P (85% identity) | Hpy1601ORF5220P | |
| 5235 | carboxylating nicotinate-nucleotide | |||
| 5710 | DNA polymerase I | |||
| 5715 | S | S.Hpy17874ORF3814P (100% identity) | S.Hpy1601ORF5720P | |
| 5720 | RM | Hpy17874ORF3814P (98% identity) | Hpy1601ORF5720P | |
| 5725 | ComF family protein | |||
| 5850 | LptF/LptG family permease | |||
| 5855 | M | M1.Hpy17874ORF3959P (100% identity) | CCATC | M1.Hpy1601ORF5855P |
| 5860 | M | M2.HpyGE7IV (100% identity) | CCATC | M2.Hpy1601ORF5855P |
| 5865 | R | Hpy17874ORF3959P (100% identity) | CCATC | Hpy1601ORF5855P |
| 5870 | outer membrane protein | |||
| 5945 | SocA family protein | |||
| 5950 | RM | Hpy17874ORF4084P (94% identity) | Hpy1601ORF5950P | |
| 5955 | type III restriction-modification system | |||
| 6115 | 67 aa hypothetical protein | |||
| 6120 | M | M.Hpy17874ORF4286P (100% identity) | TGCA | M.Hpy1601ORF6120P |
| 6125 | R | HpyI014XIP (99% identity) | TGCA | Hpy1601ORF6120P |
| 6130 | cytochrome c1 | |||
| 6640 | agmatine/peptidylarginine deiminase | |||
| 6645 | M | M1.Hpy17874ORF556P (100% identity) | CCTC | M1.Hpy1601ORF6645P |
| 6650 | M | M2.Hpy17874ORF556P (100% identity) | CCTC | M2.Hpy1601ORF6645P |
| 6655 | R | Hpy17874ORF556P (96% identity) | CCTC | Hpy1601ORF6645P |
| 6660 | restriction endonuclease | |||
| 6655 | HNH endonuclease | |||
| 6660 | R | HpyI012XIIIP (100% identity) | CCTTC | Hpy1601ORF6665P |
| 6665 | M | M.Hpy17874ORF576P (100% identity) | CCTTC | M.Hpy1601ORF6665P |
| 6670 | sodium/proline symporter PutP | |||
| 6855 | 330 aa hypothetical protein | |||
| 6860 | M | M.Hpy17874ORF811P (100% identity) | GATC | M.Hpy1601ORF6860P |
| 6865 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 7300 | IS1595 family transposase | |||
| 7305 | M | M1.HpyU415ORF865P (17% identity) | M1.Hpy1601ORF7305P | |
| 7315 | 93 aa hypothetical protein | |||
| 7320 | type II toxin-antitoxin system YafQ family | |||
| 7325 | M | M.HpyU418ORF860P (12% identity) | M2.Hpy1601ORF7305P | |
| 7330 | M | M.HpyI012ORF900P (83% identity) | M3.Hpy1601ORF7305P | |
| 7335 | R | R1.HpyI012ORF900P (99% identity) | R1.Hpy1601ORF7305P | |
| 7340 | R | R2.HpyI012ORF900P (100% identity) | R2.Hpy1601ORF7305P | |
| 7345 | pseudaminic acid synthase | |||
| 7735 | exodeoxyribonuclease VII large subunit | |||
| 7740 | M | M.Hpy17874ORF4995P (98% identity) | TCGA | M.Hpy1601ORF7740P |
| 7745 | 204 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1175 | 2-oxoacid:acceptor oxidoreductase family | |||
| 1180 | R | Hpy17874ORF5645P (100% identity) | Hpy1601ORF1185P | |
| 1185 | M | M.Hpy17874ORF5645P (100% identity) | M.Hpy1601ORF1185P | |
| 1190 | 54 aa hypothetical protein | |||
| 5285 | copper response regulator transcription factor | |||
| 5290 | M | M.Hpy17874ORF6942P (100% identity) | M.Hpy1601ORF5290P | |
| 5295 | R | Hpy17874ORF6942P (100% identity) | Hpy1601ORF5290P | |
| 5300 | rod shape-determining protein MreC | |||
| 5345 | DNA/RNA non-specific endonuclease | |||
| 5350 | M | M.Hpy17874ORF6872P (56% identity) | M.Hpy1601ORF5350BP | |
| 5355 | M | M.Hpy17874ORF6872P (43% identity) | M.Hpy1601ORF5350AP | |
| 5360 | R | Hpy17874ORF6872P (98% identity) | Hpy1601ORF5350P | |
| 5365 | biotin synthase | |||
| 5950 | class I SAM-dependent DNA methyltransferase | |||
| 5955 | R | Hpy17874ORF4099P (100% identity) | Hpy1601ORF5960P | |
| ??? | M | M.HpySWT08ORF7345P (97% identity) | M.Hpy1601ORF5960P | |
| 5970 | ATP-dependent DNA helicase RecG | |||