Mycoplasmopsis bovis J228 |
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Putative Mycoplasmopsis bovis J228 RM systems
Ref: Garcia-Galan,A. et al. bioRxiv (2021)
REBASE ref # 33616
Complete sequence: 1,112,468 bp
GenBank #: CP068731
REBASE acronym: MboJ228
Org_num: 54722
All begin JNG60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3670 | IS3 family transposase | |||
| 3675 | S | S3.MbosMb1ORF1005P (24% identity) | S5.MboJ228ORF3715P | |
| 3680 | S | S4.MboJ6ORF1160P (100% identity) | S4.MboJ228ORF3715P | |
| 3685 | S | S3.MboJ6ORF1160P (100% identity) | S3.MboJ228ORF3715P | |
| 3690 | ATP-binding protein | |||
| 3695 | S | S2.MbosMb1ORF1005P (100% identity) | S2.MboJ228ORF3715P | |
| 3700 | site-specific integrase | |||
| 3705 | R | MbosMb1ORF1005P (100% identity) | MboJ228ORF3715P | |
| 3710 | S | S1.MboJ279ORF3710P (100% identity) | S1.MboJ228ORF3715P | |
| 3715 | M | M.MbosMb1ORF1005P (100% identity) | M.MboJ228ORF3715P | |
| 3720 | 246 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1115 | 92 aa hypothetical protein | |||
| 1120 | M | M.Mbos184ORF3155P (100% identity) | RCATGY | M.MboJ228ORF1120P |
| 1125 | ribonuclease HIII | |||
| 1620 | variable surface lipoprotein | |||
| 1625 | M | M.MboXBY01ORFBP (100% identity) | GATC | M.MboJ228ORF1625P |
| 1630 | 30S ribosomal protein S2 | |||
| 2295 | excinuclease ABC subunit UvrB | |||
| 2300 | M | M.MbosMb1ORF2105P (100% identity) | GCNGC | M.MboJ228ORF2300P |
| 2305 | 150 aa hypothetical protein | |||
| 3045 | 53 aa hypothetical protein | |||
| 3050 | R | MbosMb1ORF1625P (100% identity) | CTAG | MboJ228ORF3055P |
| 3055 | M | M.MbosMb1ORF1625P (100% identity) | CTAG | M.MboJ228ORF3055P |
| 3060 | DNA polymerase III subunit delta | |||
| 3975 | AAA family ATPase | |||
| 3980 | R | R1.MboJ279ORF3990P (100% identity) | R1.MboJ228ORF3995P | |
| 3985 | IS3 family transposase | |||
| 3990 | R | Mfbo651ORFDP (49% identity) | GCATC | R2.MboJ228ORF3995P |
| 3995 | M | M2.MboRM16ORF2835P (100% identity) | GCATC | M1.MboJ228ORF3995P |
| 4000 | M | M2.MbosMb1ORF3285P (100% identity) | GCATC | M2.MboJ228ORF3995P |
| 4005 | 30S ribosomal protein S16 | |||
| 4085 | 78 aa hypothetical protein | |||
| 4090 | M | M.MboRM16ORF2735P (100% identity) | M.MboJ228ORF4090P | |
| 4095 | 98 aa hypothetical protein | |||
| 4240 | IS30-like element ISMbov1 family transposase | |||
| 4245 | R | MboJ279ORF4255P (100% identity) | GANTC | MboJ228ORF4250P |
| 4250 | M | M.MboJ279ORF4255P (100% identity) | GANTC | M.MboJ228ORF4250P |
| 4255 | MFS transporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 820 | 150 aa hypothetical protein | |||
| 825 | R | MboXBY01ORFMP (100% identity) | MboJ228ORF830P | |
| 830 | M | M1.MboNX114ORF860P (99% identity) | M1.MboJ228ORF830P | |
| 835 | M | M2.MboF9160ORF4260P (99% identity) | M2.MboJ228ORF830P | |
| 840 | M | M3.MboJ279ORF830P (100% identity) | M3.MboJ228ORF830P | |
| 845 | trigger factor | |||
| 4130 | Fic family protein | |||
| ??? | M | M.MboNX114ORF4085P (100% identity) | M.MboJ228ORF4135P | |
| 4145 | IS3 family transposase | |||