Escherichia coli EC-YC1908-399 |
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Putative Escherichia coli EC-YC1908-399 RM systems
Ref: Li,Z. unpublished
REBASE ref # 29448
| Sequence length: | GenBank #: | |
| Chromosome: | 4,837,477 bp | CP084534 |
| plasmid p399-1: | 258,931 bp | CP084535 |
| plasmid p399-2: | 156,002 bp | CP084536 |
REBASE acronym: Eco1908399
Org_num: 53755
All begin LDP75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12090 | AAA family ATPase | |||
| 12095 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco1908399ORF12100P |
| 12100 | M | M.Eco1908399ORFDP (100% identity) | TGANNNNNNCTTC | M.Eco1908399ORF12100P |
| 12105 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco1908399ORF12100P |
| 12110 | transposase | |||
| 12090 | AAA family ATPase | |||
| 12095 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco1908399ORFDP |
| 12100 | M | M.Eco1908399ORF12100P (100% identity) | TGANNNNNNCTTC | M.Eco1908399ORFDP |
| 12105 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco1908399ORFDP |
| 12110 | transposase | |||
| 21165 | integrase core domain-containing protein | |||
| 21170 | S | S.EcoZ147ORF19115P (100% identity) | S.Eco1908399ORFFP | |
| ??? | M | M.Eco50EVAORFFBP (100% identity) | M.Eco1908399ORFFBP | |
| ??? | M | M.EcoZ147ORF19115P (62% identity) | M.Eco1908399ORFFAP | |
| 21185 | IS3 family transposase | |||
| 21230 | IS5 family transposase | |||
| 21235 | R | EcoZ147ORF19045P (100% identity) | Eco1908399ORF21245P | |
| 21240 | S | S.EcoZ147ORF19045P (100% identity) | S.Eco1908399ORF21245P | |
| 21245 | M | M.EcoZ147ORF19045P (100% identity) | M.Eco1908399ORF21245P | |
| 21250 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6585 | drug/metabolite exporter YedA | |||
| 6590 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco1908399Dcm2P |
| 6595 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco1908399Dcm2P |
| 6600 | phosphohydrolase | |||
| 10230 | LexA family transcriptional regulator | |||
| 10235 | M | M.Efe41C20ORF1660P (100% identity) | GATC | M.Eco1908399ORF10235P |
| 10240 | PerC family transcriptional regulator | |||
| 10230 | LexA family transcriptional regulator | |||
| 10235 | M | M.Efe41C20ORF1660P (100% identity) | GATC | M.Eco1908399ORFBP |
| 10240 | PerC family transcriptional regulator | |||
| 13895 | DNA-binding transcriptional regulator Fis | |||
| 13900 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco1908399ORF13900P |
| 13905 | DUF2556 family protein | |||
| 13895 | DNA-binding transcriptional regulator Fis | |||
| 13900 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco1908399ORFEP |
| 13905 | DUF2556 family protein | |||
| 14520 | ribulose-phosphate 3-epimerase | |||
| 14525 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1908399DamP |
| 14530 | cell division protein DamX | |||
| 14520 | ribulose-phosphate 3-epimerase | |||
| 14525 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1908399Dam2P |
| 14530 | cell division protein DamX | |||
| plasmid p399-1 | ||||
| 23610 | 55 aa hypothetical protein | |||
| 23615 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco1908399ORF23615P |
| 23620 | thermonuclease family protein | |||
| 23610 | 55 aa hypothetical protein | |||
| 23615 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco1908399ORFAP |
| 23620 | thermonuclease family protein | |||
| 24220 | 48 aa hypothetical protein | |||
| 24225 | M | M.YpsF1ORFBP (100% identity) | M.Eco1908399ORF24225P | |
| 24230 | 202 aa hypothetical protein | |||
| 24350 | DNA-binding protein | |||
| 24355 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Eco1908399ORF24355P |
| 24360 | 284 aa hypothetical protein | |||
| 24350 | DNA-binding protein | |||
| 24355 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Eco1908399ORFCP |
| 24360 | 284 aa hypothetical protein | |||
| plasmid p399-2 | ||||
| 25325 | 73 aa hypothetical protein | |||
| 25330 | M | M.EcoM9754ORF47080P (100% identity) | M.Eco1908399ORF25330P | |
| 25335 | 104 aa hypothetical protein | |||