Pseudomonas species PS1(2021) |
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Putative Pseudomonas species PS1(2021) RM systems
Ref: Du,H. et al. unpublished
REBASE ref # 33723
Complete sequence: 7,751,039 bp
GenBank #: CP084484
REBASE acronym: Psp2021
Org_num: 55046
All begin LE197_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6510 | tyrosine-type recombinase/integrase | |||
| 6515 | M | M.PaeCF41ORF25095P (100% identity) | CCCANNNNNNTCG | M.Psp2021ORF6515P |
| 6520 | S | S.PaeC42ORF12740P (100% identity) | CCCANNNNNNTCG | S.Psp2021ORF6515P |
| 6525 | anti-phage defense ZorAB system protein ZorA | |||
| 6530 | OmpA family protein | |||
| 6535 | 547 aa hypothetical protein | |||
| 6540 | DEAD/DEAH box helicase | |||
| 6545 | transposase | |||
| 6550 | IS66 family insertion sequence element accessory | |||
| 6555 | IS66 family transposase | |||
| 6560 | AAA family ATPase | |||
| 6565 | McrC family protein | |||
| 6570 | R | Pae410ORF11095P (100% identity) | CCCANNNNNNTCG | Psp2021ORF6515P |
| 6575 | integrase | |||
| 18710 | DUF262 domain-containing HNH endonuclease family | |||
| 18715 | S | S.PspBMS12ORFAP (78% identity) | S.Psp2021ORF18720P | |
| 18720 | M | M.PaeF002ORF360P (98% identity) | M.Psp2021ORF18720P | |
| 18725 | HNH endonuclease | |||
| 18730 | R | PaeZM21ORF25820P (100% identity) | Psp2021ORF18720P | |
| 18735 | peptidase M15 | |||
| 27475 | M48 family metallopeptidase | |||
| 27480 | R | Pch1815IIP (100% identity) | Psp2021ORF27490P | |
| 27485 | S | S.Pch1815II (100% identity) | S1.Psp2021ORF27490P | |
| 27490 | M | M.Pch1815II (100% identity) | M.Psp2021ORF27490P | |
| 27495 | DNA repair protein RadC | |||
| 27500 | S | S1.TspWB2ORF18655P (61% identity) | S2.Psp2021ORF27490P | |
| 27505 | site-specific integrase | |||
| 28885 | 426 aa hypothetical protein | |||
| 28890 | M | M.Pba1013ORF16665P (34% identity) | M.Psp2021ORF28890AP | |
| 28895 | IS66 family insertion sequence hypothetical | |||
| 28900 | IS66 family insertion sequence element accessory | |||
| 28905 | IS66 family transposase | |||
| 28910 | IS21-like element IS1474 family helper ATPase | |||
| 28915 | IS21 family transposase | |||
| 28920 | transposase domain-containing protein | |||
| 28925 | IS66 family transposase | |||
| 28930 | IS66 family insertion sequence element accessory | |||
| 28935 | IS66 family insertion sequence hypothetical | |||
| 28940 | 95 aa hypothetical protein | |||
| 28945 | M | M.Pae36662ORF28920P (62% identity) | M.Psp2021ORF28890BP | |
| 28950 | S | S.PstLH42ORF14515P (63% identity) | S.Psp2021ORF28890P | |
| 28955 | R | PstYH1ORF2850P (97% identity) | Psp2021ORF28890P | |
| 28960 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5790 | DndE family protein | |||
| 5795 | M | M.PspXWY1DndDP (93% identity) | M.Psp2021DndDP | |
| 5800 | DNA phosphorothioation system sulfurtransferase | |||
| 5795 | DNA sulfur modification protein DndD | |||
| 5800 | M | M.PqiS1DndCP (97% identity) | M.Psp2021DndCP | |
| 5805 | DNA sulfur modification protein DndB | |||
| 5800 | DNA phosphorothioation system sulfurtransferase | |||
| 5805 | M | M.Psi21052DndBP (95% identity) | M.Psp2021DndBP | |
| 5810 | IS5-like element ISPa41 family transposase | |||
| 7465 | IS5 family transposase | |||
| 7470 | M | M.PaeH1ORF14995P (100% identity) | M.Psp2021ORF7470P | |
| 7475 | substrate-binding domain-containing protein | |||
| 17250 | nucleoid-associated protein YejK | |||
| 17255 | M | M.PspHORFAP (100% identity) | M.Psp2021ORF17255P | |
| 17260 | Arc family DNA-binding protein | |||
| 21525 | nucleoid-associated protein YejK | |||
| 21530 | M | M.PaeY82ORF4438P (100% identity) | M.Psp2021ORF21530P | |
| 21535 | Arc family DNA-binding protein | |||
| 25625 | zinc ribbon domain-containing protein | |||
| 25630 | M | M.Pae11452II (100% identity) | GGTACC | M.Psp2021ORF25630P |
| 25635 | 346 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6555 | IS66 family transposase | |||
| ??? | R | PaeF023McrBP (96% identity) | Psp2021McrBP | |
| 6565 | R | PaesAG1McrCP (95% identity) | Psp2021McrCP | |
| 6570 | type I restriction endonuclease subunit R | |||