Escherichia coli TX1999 |
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Putative Escherichia coli TX1999 RM systems
Ref: Rasko,D. et al. unpublished
REBASE ref # 13962
Contig set: 5,249,372 bp
GenBank #: AFEB00000000 (NZ_AFEB00000000)
REBASE acronym: EcoTX1999
Org_num: 52751
All begin ECTX1999_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2156 | 254 aa hypothetical protein | |||
| 2157 | R | EcoSTEC346ORFGP (100% identity) | AGCANNNNNNNTAG | EcoTX1999ORF2159P |
| 2158 | S | S.EcoSTEC346ORFGP (100% identity) | AGCANNNNNNNTAG | S.EcoTX1999ORF2159P |
| 2159 | M | M.EcoSTEC346ORFGP (99% identity) | AGCANNNNNNNTAG | M.EcoTX1999ORF2159P |
| 2160 | 380 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5470 | 60 aa hypothetical protein | |||
| 5471 | RM | SflLIN17ORF3140P (100% identity) | EcoTX1999ORF5471P | |
| 5472 | sea12 | |||
| 5115 | N-6 DNA methylase | |||
| 5116 | S | S.Eco4119ORF19475P (100% identity) | S.EcoTX1999ORF5114P | |
| 5117 | protein kinase domain protein | |||
| 4014 | ribulose-phosphate 3-epimerase | |||
| 4015 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoTX1999DamP |
| 4016 | protein damX | |||
| 5090 | reverse transcriptase family protein | |||
| 5091 | M | M.Ecocq9ORF29050P (99% identity) | M.EcoTX1999ORF5091P | |
| 5092 | 73 aa hypothetical protein | |||
| 1305 | 41 aa hypothetical protein | |||
| ??? | M | M.EcoSCU479ORF25180P (96% identity) | M.EcoTX1999ORF1306P | |
| 1308 | 73 aa hypothetical protein | |||
| 3888 | bacterial regulatory protein, Fis family | |||
| 3889 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoTX1999ORF3889P |
| 3890 | 37 aa hypothetical protein | |||
| 2224 | carboxylate/Amino Acid/Amine Transporter family | |||
| 2225 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoTX1999DcmP |
| 2226 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoTX1999DcmP |
| 2227 | HD domain protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 259 | 56 aa hypothetical protein | |||
| 260 | R | Kpn0718McrBP (83% identity) | EcoTX1999McrB2P | |
| 261 | 63 aa hypothetical protein | |||
| 262 | R | SflN97McrCP (100% identity) | EcoTX1999McrC2P | |
| 263 | transposase | |||
| 5130 | 38 aa hypothetical protein | |||
| 5131 | R | SflN97McrCP (100% identity) | EcoTX1999McrCP | |
| 5132 | R | Kpn0718McrBP (99% identity) | EcoTX1999McrBP | |
| 5133 | aec59 | |||
| 1734 | acyltransferase family protein | |||
| 1735 | R | EcoteDMcrBP (100% identity) | EcoTX1999McrB3P | |
| ??? | R | EcosEC27McrCP (100% identity) | EcoTX1999McrC3P | |
| 1738 | isocitrate dehydrogenase domain protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3128 | bacteriophage replication gene A family protein | |||
| 3129 | M | M.EcoDEC7EORF2999P (100% identity) | GATC | M.EcoTX1999ORF3129P |
| 3130 | phage/conjugal plasmid C-4 type zinc finger | |||