Escherichia coli 035053C1pKPC2_Vir_090515B1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 035053C1pKPC2_Vir_090515B1 RM systems
Ref: Zhao,Q. et al. unpublished
REBASE ref # 33261
| Sequence length: | GenBank #: | |
| Chromosome: | 4,689,215 bp | CP084026 |
| plasmid pKPC2_Vir_090515B1: | 351,436 bp | CP084027 |
REBASE acronym: Eco515B1
Org_num: 53249
All begin LC440_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18895 | adenine/cytosine-specific restriction | |||
| 18900 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco515B1ORF18905P |
| 18905 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco515B1ORF18905P |
| 18910 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco515B1ORF18905P |
| 18915 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1040 | cell division protein DamX | |||
| 1045 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco515B1DamP |
| 1050 | ribulose-phosphate 3-epimerase | |||
| 1665 | DUF2556 family protein | |||
| 1670 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco515B1ORF1670P |
| 1675 | DNA-binding transcriptional regulator Fis | |||
| 8205 | phosphohydrolase | |||
| 8210 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco515B1DcmP |
| 8215 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco515B1DcmP |
| 8220 | drug/metabolite exporter YedA | |||
| plasmid pKPC2_Vir_090515B1 | ||||
| 23810 | IS6-like element IS26 family transposase | |||
| 23815 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco515B1ORF23815P |
| 23820 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco515B1ORF23815P |
| 23825 | IS6-like element IS6100 family transposase | |||
| 24010 | recombinase family protein | |||
| 24015 | M | M.Ror218ORF170P (100% identity) | M.Eco515B1ORF24015P | |
| 24020 | R | RplS62ORF32505P (100% identity) | Eco515B1ORF24015P | |
| 24025 | ABC transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12425 | NADP-dependent isocitrate dehydrogenase | |||
| 12430 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco515B1ORF12430P |
| 12435 | site-specific DNA recombinase | |||
| 18890 | GTPase | |||
| 18895 | R | SenHNK130MrrP (100% identity) | Eco515B1MrrP | |
| 18900 | type I restriction-modification system | |||
| 18915 | endoribonuclease SymE | |||
| 18920 | R | SenHNK130McrBP (100% identity) | Eco515B1McrBP | |
| 18925 | R | SenHNK130McrCP (100% identity) | Eco515B1McrCP | |
| 18930 | 978 aa hypothetical protein | |||