Campylobacter upsaliensis Campylobacter upsaliensis CCUG 14913 |
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Putative Campylobacter upsaliensis Campylobacter upsaliensis CCUG 14913 RM systems
Ref: Astvaldsson,A. and Skarin,J. unpublished
REBASE ref # 33033
Complete sequence: 1,620,660 bp
GenBank #: OU701461
REBASE acronym: Cup14913
Org_num: 53145
All begin CU14913_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 292 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 293 | R | Cup11540IP (100% identity) | TAAYNNNNNNNTAYC | Cup14913ORF294P |
| 294 | M | M.Cup11540I (100% identity) | TAAYNNNNNNNTAYC | M.Cup14913ORF294P |
| 295 | 90 aa hypothetical protein | |||
| 296 | type II toxin-antitoxin system RelE/ParE family | |||
| 297 | S | S.Cup11540I (100% identity) | TAAYNNNNNNNTAYC | S.Cup14913ORF294P |
| 298 | argininosuccinate synthase | |||
| 1057 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 1058 | R | Cup11540ORF1085P (100% identity) | Cup14913ORF1062P | |
| 1059 | DUF3644 domain-containing protein | |||
| 1060 | S | S.Cup11540ORF1085P (100% identity) | S.Cup14913ORF1062P | |
| 1061 | 63 aa hypothetical protein | |||
| 1062 | M | M.Cup11540ORF1085P (100% identity) | M.Cup14913ORF1062P | |
| 1064 | 190 aa hypothetical protein | |||
| 1615 | Tol-Pal system protein TolB | |||
| 1616 | M | M.Cup197059ORF1587P (99% identity) | M.Cup14913ORF1616P | |
| 1617 | R | Cup11540ORF1645P (100% identity) | Cup14913ORF1616P | |
| 1618 | S | S.Cup11540ORF1645P (100% identity) | S.Cup14913ORF1616P | |
| 1619 | TonB C-terminal domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 208 | nucleotidyltransferase family protein | |||
| 209 | M | M.Cup11540ORF216P (93% identity) | M.Cup14913ORF209P | |
| 210 | DUF3883 domain-containing protein | |||
| 595 | succinyl-diaminopimelate desuccinylase | |||
| 596 | RM | Cup11540ORF611P (100% identity) | Cup14913ORF596P | |
| 597 | sulfur carrier protein ThiS | |||
| 734 | 80 aa hypothetical protein | |||
| 735 | M | M.Cup11540ORF755P (69% identity) | M.Cup14913ORF735P | |
| 736 | DUF262 domain-containing protein | |||
| 735 | adenine-specific methyltransferase EcoRI family | |||
| 736 | R | Che51209ORF832P (83% identity) | Cup14913ORF736P | |
| 737 | substrate-binding domain-containing protein | |||
| 752 | 174 aa hypothetical protein | |||
| 753 | M | M.Cup11540III (100% identity) | GATC | M.Cup14913ORF753P |
| 754 | Ppx/GppA family phosphatase | |||
| 784 | 204 aa hypothetical protein | |||
| 785 | RM | Cup11540ORF805P (100% identity) | Cup14913ORF785P | |
| 786 | S | S.Cup11540ORF805P (100% identity) | S.Cup14913ORF785P | |
| 787 | di-trans,poly-cis-decaprenylcistransferase | |||
| 1023 | 232 aa hypothetical protein | |||
| 1024 | M | M.Cup11540ORF1045P (100% identity) | M.Cup14913ORF1024P | |
| 1025 | prephenate dehydratase | |||
| 1251 | 2-amino-4-hydroxy-6- | |||
| 1252 | R | Cup11540ORF1278P (100% identity) | Cup14913ORF1254P | |
| 1253 | heme ABC transporter substrate-binding protein | |||
| 1254 | M | M.Cup11540ORF1278P (100% identity) | M.Cup14913ORF1254P | |
| 1255 | DNA polymerase I | |||
| 1293 | ATP-binding cassette domain-containing protein | |||
| 1294 | M | M.Cup736ORF7870P (100% identity) | M.Cup14913ORF1294P | |
| 1295 | 676 aa hypothetical protein | |||
| 1295 | 676 aa hypothetical protein | |||
| 1296 | M | M.Cup11540ORF1320P (100% identity) | M.Cup14913ORF1296P | |
| 1297 | acetate--CoA ligase | |||
| 1668 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1669 | R | Cup11540ORF1700P (100% identity) | Cup14913ORF1670P | |
| 1670 | M | M1.Cup11540ORF1700P (100% identity) | M1.Cup14913ORF1670P | |
| 1671 | M | M2.Cup11540ORF1700P (100% identity) | GGATG | M2.Cup14913ORF1670P |
| 1672 | DNA adenine methylase | |||
| 1671 | DNA adenine methylase | |||
| 1672 | M | M.Cup11540II (100% identity) | RAATTY | M.Cup14913ORF1672P |
| 1673 | cell surface protein | |||
| 1684 | glutamate synthase large subunit | |||
| 1685 | M | M.Cup11540ORF1716P (100% identity) | M.Cup14913ORF1685P | |
| 1686 | R | Cup11540ORF1716P (100% identity) | Cup14913ORF1685P | |
| 1687 | glutamate synthase subunit beta | |||
| 1689 | rRNA pseudouridine synthase | |||
| 1690 | M | M1.Cup11540ORF1721P (100% identity) | M1.Cup14913ORF1690P | |
| 1691 | M | M2.Cup11540ORF1721P (100% identity) | M2.Cup14913ORF1690P | |
| 1692 | R | Cup11540ORF1721P (100% identity) | Cup14913ORF1690P | |
| 1693 | crossover junction endodeoxyribonuclease RuvC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 73 | sodium:proton antiporter | |||
| 74 | R | Cup11540ORF78P (100% identity) | Cup14913ORF75P | |
| 75 | M | M.Cup11540ORF78P (99% identity) | M.Cup14913ORF75P | |
| 76 | SPASM domain-containing protein | |||
| 507 | 246 aa hypothetical protein | |||
| 508 | R | Cup11540ORF522P (99% identity) | Cup14913ORF509P | |
| 509 | M | M.Cup11540ORF522P (99% identity) | M.Cup14913ORF509P | |
| 510 | lipid-A-disaccharide synthase | |||
| 1309 | class II fumarate hydratase | |||
| 1310 | R | Cup11540ORF1335P (100% identity) | Cup14913ORF1311P | |
| ??? | M | M.Cup11540ORF1335P (100% identity) | M.Cup14913ORF1311P | |
| 1314 | DUF1090 domain-containing protein | |||