Escherichia coli CX16 |
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Putative Escherichia coli CX16 RM systems
Ref: Yang,X. et al. unpublished
REBASE ref # 33263
| Sequence length: | GenBank #: | |
| Chromosome: | 4,949,018 bp | CP081748 |
| plasmid unnamed: | 84,039 bp | CP081751 |
REBASE acronym: EcoCX16
Org_num: 53680
All begin J6O20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5545 | IS1 family transposase | |||
| 5550 | R | KpnY516ORF19290P (100% identity) | EcoCX16ORF5560P | |
| 5555 | S | S.EcoFec10II (76% identity) | S.EcoCX16ORF5560P | |
| 5560 | M | M.Kpn80147ORFIP (98% identity) | M.EcoCX16ORF5560P | |
| 5565 | integrase core domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1955 | cell division protein DamX | |||
| 1960 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoCX16DamP |
| 1965 | ribulose-phosphate 3-epimerase | |||
| 2580 | DUF2556 family protein | |||
| 2585 | M | M.EcoPO3ORF2605P (100% identity) | ATGCAT | M.EcoCX16ORF2585P |
| 2590 | DNA-binding transcriptional regulator Fis | |||
| 8320 | conserved phage C-terminal domain-containing | |||
| 8325 | M | M.EcoNIH4ORF26475P (99% identity) | M1.EcoCX16ORF8325P | |
| 8330 | M | M2.EcoCX21ORF8550P (100% identity) | M2.EcoCX16ORF8325P | |
| 8335 | phage antirepressor KilAC domain-containing | |||
| 8350 | TrmB family transcriptional regulator | |||
| 8355 | M | M.EcoCX21ORF8580P (100% identity) | M.EcoCX16ORF8355P | |
| 8360 | 100 aa hypothetical protein | |||
| 9875 | phosphohydrolase | |||
| 9880 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoCX16DcmP |
| 9885 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoCX16DcmP |
| 9890 | drug/metabolite exporter YedA | |||
| 14040 | DUF1317 domain-containing protein | |||
| ??? | M | M.EcoCX21ORF14270P (100% identity) | M.EcoCX16ORF14045P | |
| 14050 | DUF4060 family protein | |||
| 19065 | LexA family transcriptional regulator | |||
| 19070 | M | M.EcoNIH4ORF11555P (100% identity) | GATC | M.EcoCX16ORF19070P |
| 19075 | PerC family transcriptional regulator | |||
| 22265 | phage holin, lambda family | |||
| 22270 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoCX16ORF22270P | |
| 22275 | 67 aa hypothetical protein | |||
| 22300 | LexA family transcriptional regulator | |||
| 22305 | M | M.EcoW102ORF22410P (100% identity) | GATC | M.EcoCX16ORF22305P |
| 22310 | PerC family transcriptional regulator | |||
| plasmid unnamed | ||||
| 25580 | phage holin, lambda family | |||
| 25585 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoCX16ORF25585P | |
| 25590 | 67 aa hypothetical protein | |||
| 25615 | LexA family transcriptional regulator | |||
| 25620 | M | M.EcoW102ORF22410P (100% identity) | GATC | M.EcoCX16ORF25620P |
| 25625 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3555 | inovirus Gp2 family protein | |||
| 3560 | R | Kox87739ORFCP (99% identity) | EcoCX16ORF3565P | |
| 3565 | M | M.Sen5006ORF16245P (100% identity) | M.EcoCX16ORF3565P | |
| 3570 | Cd(II)/Pb(II)-responsive transcriptional | |||
| 9760 | prepilin-type N-terminal cleavage/methylation | |||
| 9765 | R | EcoZ137ORF8170P (88% identity) | CCGAG | EcoCX16ORF9790BP |
| 9770 | IS66 family insertion sequence hypothetical | |||
| 9775 | IS66 family insertion sequence element accessory | |||
| 9780 | IS66 family transposase | |||
| 9785 | R | KquC3001ORF9710P (11% identity) | CCGAG | EcoCX16ORF9790AP |
| 9790 | M | M.EcoCX21ORF10015P (100% identity) | CCGAG | M.EcoCX16ORF9790P |
| 9795 | SpnT protein | |||