Escherichia coli AH04 |
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Putative Escherichia coli AH04 RM systems
Ref: Yang,X. et al. unpublished
REBASE ref # 33263
| Sequence length: | GenBank #: | |
| Chromosome: | 4,886,833 bp | CP081706 |
| plasmid unnamed1: | 94,797 bp | CP081707 |
REBASE acronym: EcoAH04
Org_num: 53598
All begin J6O21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4070 | IS6-like element IS26 family transposase | |||
| 4075 | M | M.EcoCT01ORF4080P (100% identity) | M.EcoAH04ORF4075P | |
| 4080 | S | S.EcoE35ORF23380P (46% identity) | S1.EcoAH04ORF4075P | |
| 4085 | S | S.EcoE35ORF23380P (46% identity) | S2.EcoAH04ORF4075P | |
| 4090 | R | EcoE35ORF23380P (100% identity) | EcoAH04ORF4075P | |
| 4095 | recombinase family protein | |||
| plasmid unnamed1 | ||||
| 24665 | 119 aa hypothetical protein | |||
| 24670 | R | EcoCT01ORF24695P (100% identity) | EcoAH04ORF24680P | |
| 24675 | S | S.EcoCT01ORF24695P (100% identity) | S.EcoAH04ORF24680P | |
| 24680 | M | M.EcoCT01ORF24695P (100% identity) | M.EcoAH04ORF24680P | |
| 24685 | DNA polymerase III subunit theta | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2300 | DUF2556 family protein | |||
| 2305 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoAH04ORF2305P |
| 2310 | DNA-binding transcriptional regulator Fis | |||
| 3450 | DEAD/DEAH box helicase | |||
| 3455 | RM | Sma1978ORFHP (99% identity) | CTTGAC | EcoAH04ORF3455P |
| 3460 | IS66 family transposase | |||
| 4145 | IS1 family transposase | |||
| 4150 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.EcoAH04ORF4150P |
| 4155 | R | Sen23701ORF24490P (100% identity) | CCWGG | EcoAH04ORF4150P |
| 4160 | IS6-like element IS26 family transposase | |||
| 9465 | phosphohydrolase | |||
| 9470 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoAH04DcmP |
| 9475 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.EcoAH04DcmP |
| 9480 | drug/metabolite exporter YedA | |||
| 15850 | replication endonuclease | |||
| 15855 | M | M.EcoPE15ORF23185P (100% identity) | GATC | M.EcoAH04ORF15855P |
| 15860 | TraR/DksA family transcriptional regulator | |||
| 18915 | LexA family transcriptional regulator | |||
| 18920 | M | M.EcoKo009ORF3525P (100% identity) | GATC | M.EcoAH04ORF18920P |
| 18925 | PerC family transcriptional regulator | |||
| 20540 | phage lysis protein EssD | |||
| 20545 | M | M.Sso63633ORF22290P (100% identity) | M.EcoAH04ORF20545P | |
| 20550 | 67 aa hypothetical protein | |||
| 22105 | DinI family protein | |||
| 22110 | R | EcoTIF10ORFCP (100% identity) | EcoAH04ORF22115P | |
| 22115 | M | M.SflSTLE1ORF5615P (100% identity) | M.EcoAH04ORF22115P | |
| 22120 | 257 aa hypothetical protein | |||
| 22300 | LexA family transcriptional regulator | |||
| 22305 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoAH04ORF22305P |
| 22310 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3270 | inovirus Gp2 family protein | |||
| 3275 | R | SenLASSORF19350P (100% identity) | EcoAH04ORF3280P | |
| 3280 | M | M.Sen5006ORF16245P (100% identity) | M.EcoAH04ORF3280P | |
| 3285 | Cd(II)/Pb(II)-responsive transcriptional | |||