Frankia species CcI3 |
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Putative Frankia species CcI3 RM systems
Ref: Normand,P. et al. Genome Res. 17 (1), 7-15 (2007)
REBASE ref # 9650
Complete sequence: 5,433,628 bp
GenBank #: CP000249 (NC_007777)
REBASE acronym: FspC
Org_num: 4271
All begin Francci3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 191 | IS630 family transposase | |||
| 192 | M | M.FspThrORF677P (100% identity) | M.FspCORF192P | |
| 193 | S | S.FspThrORF677P (100% identity) | S.FspCORF192P | |
| 194 | R | FspThrORF677P (100% identity) | FspCORF192P | |
| 195 | pseudogene | |||
| 4010 | protein of unknown function DUF45 | |||
| 4011 | R | FspThrORF4613P (100% identity) | FspCORF4014P | |
| 4012 | S | S.FspThrORF4613P (100% identity) | S.FspCORF4014P | |
| 4013 | transposase, IS4 family | |||
| 4014 | M | M.FspThrORF2585P (100% identity) | M.FspCORF4014P | |
| 4015 | UBA/THIF-type NAD/FAD binding fold | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1101 | 132 aa hypothetical protein | |||
| 1102 | RM | FspThrORF4559P (100% identity) | FspCORF1101P | |
| 1103 | 199 aa hypothetical protein | |||
| 2344 | phage integrase | |||
| 2345 | M | M.FspThrORF1200P (100% identity) | CCCGGG | M.FspCORF2345P |
| 2346 | 105 aa hypothetical protein | |||
| 2673 | serine/threonine protein kinase | |||
| 2674 | M | M.FspThrORF1852P (100% identity) | M.FspCORF2674P | |
| 2675 | 642 aa conserved hypothetical protein | |||
| 2727 | 181 aa hypothetical protein | |||
| 2728 | RM | FspThrORF2514P (99% identity) | FspCORF2728P | |
| 2729 | helicase-like | |||
| 2952 | serine/threonine protein kinase | |||
| 2953 | RM | FspThrORF3443P (100% identity) | FspCORF2953P | |
| 2954 | bacteriophage (phiC31) resistance gene PglY | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 155 | 321 aa hypothetical protein | |||
| 156 | R | 363 aa hypothetical protein | FspCMrrP | |
| 157 | Uncharacterized protein | |||
| 1122 | transposase | |||
| 1123 | R | FspThrMrr2P (100% identity) | FspCMrr2P | |
| 1124 | 300 aa hypothetical protein | |||
| 1131 | GCN5-related N-acetyltransferase | |||
| 1132 | R | FspThrMrr3P (65% identity) | FspCMrr3P | |
| 1133 | 104 aa hypothetical protein | |||
| 2838 | carbohydrate ABC transporter membrane protein 2, | |||
| 2839 | R | FspThrMcrCP (100% identity) | FspCMcrCP | |
| 2840 | R | FspThrMcrBP (100% identity) | FspCMcrBP | |
| 2841 | Zeta toxin | |||