Salmonella enterica subsp. enterica serovar 4,[5],12:i:- FSIS1701601 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar 4,[5],12:i:- FSIS1701601 RM systems
Ref: Li,C. et al. unpublished
REBASE ref # 33764
| Sequence length: | GenBank #: | |
| Chromosome: | 4,998,621 bp | CP082384 |
| plasmid pF18S043: | 102,674 bp | CP082385 |
REBASE acronym: Sen1601
Org_num: 55175
All begin CEH29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20215 | restriction endonuclease | |||
| 20220 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1601ORF20225P |
| 20225 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen1601ORF20225P |
| 20230 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1601ORF20225P |
| 20235 | endoribonuclease SymE | |||
| plasmid pF18S043 | ||||
| 24770 | IS1 family transposase | |||
| 24775 | R | SenceORFJP (100% identity) | CAAYNNNNNCTGG | Sen1601ORF24785P |
| 24780 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Sen1601ORF24785P |
| 24785 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.Sen1601ORF24785P |
| 24790 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.Sen1601DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 3230 | DUF2732 domain-containing protein | |||
| 3235 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen1601ORF3235P |
| 3240 | replication endonuclease | |||
| 5610 | IS6-like element IS26 family transposase | |||
| 5615 | M | M.StyCORF187P (49% identity) | M.Sen1601ORF5615P | |
| 5620 | thermonuclease family protein | |||
| 6245 | ead/Ea22-like family protein | |||
| 6250 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen1601ORF6250P |
| 6255 | 92 aa hypothetical protein | |||
| 9560 | PerC family transcriptional regulator | |||
| 9565 | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen1601ORF9565P |
| 9570 | RusA family crossover junction | |||
| 9810 | phosphohydrolase | |||
| 9815 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1601DcmP |
| 9820 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen1601DcmP |
| 9825 | drug/metabolite exporter YedA | |||
| 20375 | BREX system P-loop protein BrxC | |||
| 20380 | RM | StyUK1IV (100% identity) | GATCAG | Sen1601ORF20380P |
| 20385 | AAA family ATPase | |||
| 22295 | LexA family transcriptional regulator | |||
| 22300 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Sen1601ORF22300P |
| 22305 | PerC family transcriptional regulator | |||
| plasmid pF18S043 | ||||
| 24625 | 73 aa hypothetical protein | |||
| 24630 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Sen1601ORF24630P |
| 24635 | 102 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17920 | small effector SsaA | |||
| 17925 | R | StyUK1IP (99% identity) | CAGAG | Sen1601ORF17930P |
| 17930 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1601ORF17930P |
| 17935 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20210 | BrnT family toxin | |||
| 20215 | R | StyUK1MrrP (100% identity) | Sen1601MrrP | |
| 20220 | type I restriction-modification system | |||