Salmonella enterica subsp. enterica serovar Typhimurium var. 5- |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium var. 5- RM systems
Ref: Li,C. et al. unpublished
REBASE ref # 33765
| Sequence length: | GenBank #: | |
| Chromosome: | 4,811,729 bp | CP082647 |
| Chromosome: | 4,880,666 bp | CP082751 |
| Chromosome: | 4,854,709 bp | CP082662 |
| Chromosome: | 4,850,646 bp | CP082739 |
| Chromosome: | 4,906,338 bp | CP082670 |
| Chromosome: | 4,768,418 bp | CP082645 |
| Chromosome: | 4,962,998 bp | CP082652 |
| plasmid pN16S021: | 231,747 bp | CP082752 |
| plasmid pN16S070-1: | 189,366 bp | CP082740 |
| plasmid pN16S089-1: | 159,498 bp | CP082663 |
| plasmid pN16S089-2: | 107,020 bp | CP082664 |
| plasmid pN16S089-3: | 6,836 bp | CP082665 |
| plasmid pN16S132: | 58,472 bp | CP082653 |
| plasmid pN16S189-1: | 142,512 bp | CP082648 |
| plasmid pN16S189-2: | 101,040 bp | CP082649 |
| plasmid pN16S214: | 174,026 bp | CP082646 |
| plasmid pN17S0016-2: | 91,278 bp | CP082672 |
| plasmid pN17S0016-3: | 101,612 bp | CP082673 |
| plasmid pN17S016-1: | 113,629 bp | CP082671 |
REBASE acronym:
Org_num:
All begin CWW83_, CWX32_, CWX51_, CWX92_, CWY45_, CWY70_, D7E16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19820 | restriction endonuclease | |||
| 19825 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS189ORF19830P |
| 19830 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS189ORF19830P |
| 19835 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS189ORF19830P |
| 19840 | endoribonuclease SymE | |||
| Chromosome | ||||
| 20095 | restriction endonuclease | |||
| 20100 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS021ORF20105P |
| 20105 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS021ORF20105P |
| 20110 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS021ORF20105P |
| 20115 | endoribonuclease SymE | |||
| Chromosome | ||||
| 20140 | restriction endonuclease | |||
| 20145 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS089ORF20150P |
| 20150 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS089ORF20150P |
| 20155 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS089ORF20150P |
| 20160 | endoribonuclease SymE | |||
| Chromosome | ||||
| 20010 | restriction endonuclease | |||
| 20015 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS070ORF20020P |
| 20020 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS070ORF20020P |
| 20025 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS070ORF20020P |
| 20030 | endoribonuclease SymE | |||
| Chromosome | ||||
| 20195 | restriction endonuclease | |||
| 20200 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS016ORF20205P |
| 20205 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS016ORF20205P |
| 20210 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS016ORF20205P |
| 20215 | endoribonuclease SymE | |||
| Chromosome | ||||
| 19445 | restriction endonuclease | |||
| 19450 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen6S214ORF19455P |
| 19455 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen6S214ORF19455P |
| 19460 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen6S214ORF19455P |
| 19465 | endoribonuclease SymE | |||
| Chromosome | ||||
| 20575 | restriction endonuclease | |||
| 20580 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS132ORF20585P |
| 20585 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS132ORF20585P |
| 20590 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS132ORF20585P |
| 20595 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS189DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS189ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9160 | PerC family transcriptional regulator | |||
| 9165 | M | M.StyUK1V (100% identity) | GATC | M.SenS189ORF9165P |
| 9170 | RusA family crossover junction | |||
| 9405 | phosphohydrolase | |||
| 9410 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS189DcmP |
| 9415 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS189DcmP |
| 9420 | drug/metabolite exporter YedA | |||
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS021DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS021ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9110 | PerC family transcriptional regulator | |||
| 9115 | M | M.StyUK1V (100% identity) | GATC | M.SenS021ORF9115P |
| 9120 | RusA family crossover junction | |||
| 9355 | phosphohydrolase | |||
| 9360 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS021DcmP |
| 9365 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS021DcmP |
| 9370 | drug/metabolite exporter YedA | |||
| 22585 | ogr/Delta-like zinc finger family protein | |||
| 22590 | M | M.Cfr350ORF1210P (100% identity) | M.SenS021ORF22590P | |
| 22595 | 66 aa hypothetical protein | |||
| 22610 | 75 aa hypothetical protein | |||
| 22615 | M | M.SenST203ORF20895P (99% identity) | M.SenS021ORF22615P | |
| 22620 | 127 aa hypothetical protein | |||
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS089DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS089ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9155 | PerC family transcriptional regulator | |||
| 9160 | M | M.StyUK1V (100% identity) | GATC | M.SenS089ORF9160P |
| 9165 | RusA family crossover junction | |||
| 9400 | phosphohydrolase | |||
| 9405 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS089DcmP |
| 9410 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS089DcmP |
| 9415 | drug/metabolite exporter YedA | |||
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS070DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS070ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9065 | PerC family transcriptional regulator | |||
| 9070 | M | M.StyUK1V (100% identity) | GATC | M.SenS070ORF9070P |
| 9075 | RusA family crossover junction | |||
| 9310 | phosphohydrolase | |||
| 9315 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS070DcmP |
| 9320 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS070DcmP |
| 9325 | drug/metabolite exporter YedA | |||
| Chromosome | ||||
| 1870 | cell division protein DamX | |||
| 1875 | M | M.StyTDamP (100% identity) | GATC | M.SenS016DamP |
| 1880 | ribulose-phosphate 3-epimerase | |||
| 2365 | DUF2556 family protein | |||
| 2370 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS016ORF2370P |
| 2375 | DNA-binding transcriptional regulator Fis | |||
| 5980 | PerC family transcriptional regulator | |||
| 5985 | M | M.Sty13348ORF110P (100% identity) | GATC | M.SenS016ORF5985P |
| 5990 | RusA family crossover junction | |||
| 9300 | PerC family transcriptional regulator | |||
| 9305 | M | M.StyUK1V (100% identity) | GATC | M.SenS016ORF9305P |
| 9310 | RusA family crossover junction | |||
| 9545 | phosphohydrolase | |||
| 9550 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS016DcmP |
| 9555 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS016DcmP |
| 9560 | drug/metabolite exporter YedA | |||
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.Sen6S214DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen6S214ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9085 | phosphohydrolase | |||
| 9090 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen6S214DcmP |
| 9095 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen6S214DcmP |
| 9100 | drug/metabolite exporter YedA | |||
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS132DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS132ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 6090 | PerC family transcriptional regulator | |||
| 6095 | M | M.Sty13348ORF110P (100% identity) | GATC | M.SenS132ORF6095P |
| 6100 | RusA family crossover junction | |||
| 9405 | PerC family transcriptional regulator | |||
| 9410 | M | M.StyUK1V (100% identity) | GATC | M.SenS132ORF9410P |
| 9415 | RusA family crossover junction | |||
| 9650 | phosphohydrolase | |||
| 9655 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS132DcmP |
| 9660 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenS132DcmP |
| 9665 | drug/metabolite exporter YedA | |||
| plasmid pN16S021 | ||||
| 23925 | 103 aa hypothetical protein | |||
| 23930 | M | M.SspPIBORF23080P (100% identity) | M.SenS021ORF23930P | |
| 23935 | 73 aa hypothetical protein | |||
| 24855 | 120 aa hypothetical protein | |||
| 24860 | M | M.Vch11614ORFCP (100% identity) | M.SenS021ORF24860P | |
| 24865 | 143 aa hypothetical protein | |||
| plasmid pN16S070-1 | ||||
| 23785 | 143 aa hypothetical protein | |||
| 23790 | M | M.SenTFORF24805P (100% identity) | CCNGG | M.SenS070ORF23790P |
| 23795 | 100 aa hypothetical protein | |||
| 24155 | 143 aa hypothetical protein | |||
| 24160 | M | M.Vch11614ORFCP (100% identity) | M.SenS070ORF24160P | |
| 24165 | 120 aa hypothetical protein | |||
| plasmid pN16S089-1 | ||||
| 24375 | 120 aa hypothetical protein | |||
| 24380 | M | M.Vch11614ORFCP (100% identity) | M.SenS089ORF24380P | |
| 24385 | 143 aa hypothetical protein | |||
| plasmid pN16S089-2 | ||||
| 24590 | 76 aa hypothetical protein | |||
| 24595 | M | M.SphSSU5ORF88P (95% identity) | M.SenS089ORF24595P | |
| 24600 | 280 aa hypothetical protein | |||
| plasmid pN16S132 | ||||
| 24495 | 118 aa hypothetical protein | |||
| 24500 | M | M.StyUK1ORFAP (100% identity) | M.SenS132ORF24500P | |
| 24505 | 73 aa hypothetical protein | |||
| plasmid pN16S189-1 | ||||
| 23725 | 120 aa hypothetical protein | |||
| 23730 | M | M.Vch11614ORFCP (100% identity) | M.SenS189ORF23730P | |
| 23735 | IS66 family transposase | |||
| plasmid pN16S189-2 | ||||
| 24115 | 73 aa hypothetical protein | |||
| 24120 | M | M.StyR64ORFAP (100% identity) | M.SenS189ORF24120P | |
| 24125 | 103 aa hypothetical protein | |||
| plasmid pN16S214 | ||||
| 23680 | 120 aa hypothetical protein | |||
| 23685 | M | M.Vch11614ORFCP (100% identity) | M.Sen6S214ORF23685P | |
| 23690 | 143 aa hypothetical protein | |||
| plasmid pN17S0016-2 | ||||
| 24845 | glutamine--tRNA ligase | |||
| 24850 | M | M.SenYU39ORF5083P (100% identity) | M.SenS016ORF24850P | |
| 24855 | 226 aa hypothetical protein | |||
| plasmid pN17S0016-3 | ||||
| 25565 | 73 aa hypothetical protein | |||
| 25570 | M | M.StyUK1ORFAP (100% identity) | M.SenS016ORF25570P | |
| 25575 | 118 aa hypothetical protein | |||
| plasmid pN17S016-1 | ||||
| 24125 | 73 aa hypothetical protein | |||
| 24130 | M | M.SenSE991ORF23665P (100% identity) | M.SenS016ORF24130P | |
| 24135 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5695 | GTPase family protein | |||
| 5700 | M | M.SenXSKORFDP (100% identity) | CACCGT | M.SenS189ORF5700P |
| 5705 | R | SenXSKORFDP (100% identity) | CACCGT | SenS189ORF5700P |
| 5710 | inovirus Gp2 family protein | |||
| 17270 | small effector SsaA | |||
| 17275 | R | StyUK1IP (99% identity) | CAGAG | SenS189ORF17280P |
| 17280 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS189ORF17280P |
| 17285 | MFS transporter | |||
| Chromosome | ||||
| 5680 | GTPase family protein | |||
| 5685 | M | M.SenXSKORFDP (100% identity) | CACCGT | M.SenS021ORF5685P |
| 5690 | R | SenXSKORFDP (100% identity) | CACCGT | SenS021ORF5685P |
| 5695 | inovirus Gp2 family protein | |||
| 17525 | small effector SsaA | |||
| 17530 | R | StyUK1IP (99% identity) | CAGAG | SenS021ORF17535P |
| 17535 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS021ORF17535P |
| 17540 | MFS transporter | |||
| Chromosome | ||||
| 5695 | GTPase family protein | |||
| 5700 | M | M.SenXSKORFDP (100% identity) | CACCGT | M.SenS089ORF5700P |
| 5705 | R | SenXSKORFDP (100% identity) | CACCGT | SenS089ORF5700P |
| 5710 | inovirus Gp2 family protein | |||
| 17555 | small effector SsaA | |||
| 17560 | R | StyUK1IP (99% identity) | CAGAG | SenS089ORF17565P |
| 17565 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS089ORF17565P |
| 17570 | MFS transporter | |||
| Chromosome | ||||
| 5660 | GTPase family protein | |||
| 5665 | M | M.SenXSKORFDP (100% identity) | CACCGT | M.SenS070ORF5665P |
| 5670 | R | SenXSKORFDP (100% identity) | CACCGT | SenS070ORF5665P |
| 5675 | inovirus Gp2 family protein | |||
| 17435 | small effector SsaA | |||
| 17440 | R | StyUK1IP (99% identity) | CAGAG | SenS070ORF17445P |
| 17445 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS070ORF17445P |
| 17450 | MFS transporter | |||
| Chromosome | ||||
| 17960 | small effector SsaA | |||
| 17965 | R | StyUK1IP (99% identity) | CAGAG | SenS016ORF17970P |
| 17970 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS016ORF17970P |
| 17975 | MFS transporter | |||
| Chromosome | ||||
| 5690 | GTPase family protein | |||
| 5695 | M | M.SenXSKORFDP (100% identity) | CACCGT | M.Sen6S214ORF5695P |
| 5700 | R | SenXSKORFDP (100% identity) | CACCGT | Sen6S214ORF5695P |
| 5705 | inovirus Gp2 family protein | |||
| 17255 | small effector SsaA | |||
| 17260 | R | StyUK1IP (99% identity) | CAGAG | Sen6S214ORF17265P |
| 17265 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen6S214ORF17265P |
| 17270 | MFS transporter | |||
| Chromosome | ||||
| 18070 | small effector SsaA | |||
| 18075 | R | StyUK1IP (99% identity) | CAGAG | SenS132ORF18080P |
| 18080 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS132ORF18080P |
| 18085 | MFS transporter | |||
| plasmid pN16S089-3 | ||||
| 25085 | M | M.Sen4261ORF2010P (100% identity) | M.SenS089ORF25085P | |
| 25090 | R | SenSO21ORF25170P (100% identity) | SenS089ORF25085P | |
| 25095 | Rop family plasmid primer RNA-binding protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19815 | BrnT family toxin | |||
| 19820 | R | StyUK1MrrP (100% identity) | SenS189MrrP | |
| 19825 | type I restriction-modification system | |||
| Chromosome | ||||
| 20090 | BrnT family toxin | |||
| 20095 | R | StyUK1MrrP (100% identity) | SenS021MrrP | |
| 20100 | type I restriction-modification system | |||
| Chromosome | ||||
| 20135 | BrnT family toxin | |||
| 20140 | R | StyUK1MrrP (100% identity) | SenS089MrrP | |
| 20145 | type I restriction-modification system | |||
| Chromosome | ||||
| 20005 | BrnT family toxin | |||
| 20010 | R | StyUK1MrrP (100% identity) | SenS070MrrP | |
| 20015 | type I restriction-modification system | |||
| Chromosome | ||||
| 20190 | BrnT family toxin | |||
| 20195 | R | StyUK1MrrP (100% identity) | SenS016MrrP | |
| 20200 | type I restriction-modification system | |||
| Chromosome | ||||
| 19440 | BrnT family toxin | |||
| 19445 | R | StyUK1MrrP (100% identity) | Sen6S214MrrP | |
| 19450 | type I restriction-modification system | |||
| Chromosome | ||||
| 20570 | BrnT family toxin | |||
| 20575 | R | StyUK1MrrP (100% identity) | SenS132MrrP | |
| 20580 | type I restriction-modification system | |||