Salmonella enterica subsp. enterica serovar Johannesburg FSIS1608038 |
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Putative Salmonella enterica subsp. enterica serovar Johannesburg FSIS1608038 RM systems
Ref: Li,C. et al. unpublished
REBASE ref # 33764
| Sequence length: | GenBank #: | |
| Chromosome: | 4,704,412 bp | CP082447 |
| plasmid pF18S023-1: | 292,686 bp | CP082444 |
REBASE acronym: Sen8038
Org_num: 55254
All begin BL362_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4880 | 62 aa hypothetical protein | |||
| 4885 | S | S.SenSmo02ORF2495P (100% identity) | GNNTAYNNNNNRTGG | S1.Sen8038ORF4890P |
| 4890 | M | M.SenSmo02ORF2495P (100% identity) | M2.Sen8038ORF4890P | |
| 4895 | M48 family metallopeptidase | |||
| 4900 | R | SenSmo02ORF2465P (100% identity) | Sen8038ORF4890P | |
| 4905 | DUF262 domain-containing HNH endonuclease family | |||
| 4910 | DUF262 domain-containing protein | |||
| 4915 | S | S1.SenSmo02ORF2465P (98% identity) | GNNTAYNNNNNRTGG | S2.Sen8038ORF4890P |
| 4920 | M | M1.SenSmo02ORF2465P (100% identity) | M1.Sen8038ORF4890P | |
| 4925 | type IV toxin-antitoxin system YeeU family | |||
| 12585 | M48 family metallopeptidase | |||
| 12590 | R | Sen9981ORF11670P (100% identity) | TCAGNNNNNNTGC | Sen8038ORF12605P |
| 12595 | YecA family protein | |||
| 12600 | S | S.SenSMo01ORF8345P (100% identity) | TCAGNNNNNNTGC | S.Sen8038ORF12605P |
| 12605 | M | M.SenSMo01ORF8345P (100% identity) | TCAGNNNNNNTGC | M.Sen8038ORF12605P |
| 12610 | DUF29 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2530 | 127 aa hypothetical protein | |||
| 2535 | M | M.SenST203ORF20895P (100% identity) | GATC | M.Sen8038ORF2535P |
| 2540 | 75 aa hypothetical protein | |||
| 2540 | 75 aa hypothetical protein | |||
| 2545 | M | M.SenST203ORF20905P (100% identity) | M.Sen8038ORF2545P | |
| 2550 | replication endonuclease | |||
| 2555 | 66 aa hypothetical protein | |||
| 2560 | M | M.SenST203ORF20920P (100% identity) | M.Sen8038ORF2560P | |
| 2565 | ogr/Delta-like zinc finger family protein | |||
| 3480 | helix-turn-helix domain-containing protein | |||
| 3485 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Sen8038ORF3485P |
| 3490 | LexA family transcriptional regulator | |||
| 4935 | restriction endonuclease | |||
| 4940 | R | Ssp8103ORF19015P (100% identity) | Sen8038ORF4940P | |
| 4945 | YebC/PmpR family DNA-binding transcriptional | |||
| 14925 | drug/metabolite exporter YedA | |||
| 14930 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen8038DcmP |
| 14935 | M | M.SenST203DcmP (100% identity) | CCWGG | M.Sen8038DcmP |
| 14940 | phosphohydrolase | |||
| 17085 | ead/Ea22-like family protein | |||
| 17090 | M | M.Sen9981ORF7135P (100% identity) | M.Sen8038ORF17090P | |
| 17095 | DUF550 domain-containing protein | |||
| 17850 | Pyocin large subunit | |||
| 17855 | M | M.SenST203ORF13265P (100% identity) | M.Sen8038ORF17855P | |
| 17860 | 77 aa hypothetical protein | |||
| 17900 | DUF1317 domain-containing protein | |||
| 17905 | M | M.SenST203ORF13320P (100% identity) | AAGCTT | M.Sen8038ORF17905P |
| 17910 | DUF1670 domain-containing protein | |||
| 18760 | RusA family crossover junction | |||
| 18765 | M | M.SenST203ORF14210P (100% identity) | M.Sen8038ORF18765P | |
| 18770 | PerC family transcriptional regulator | |||
| 22350 | ribulose-phosphate 3-epimerase | |||
| 22355 | M | M.StyTDamP (100% identity) | GATC | M.Sen8038DamP |
| 22360 | cell division protein DamX | |||
| plasmid pF18S023-1 | ||||
| 855 | 284 aa hypothetical protein | |||
| 860 | M | M.Ssp15303ORFEP (100% identity) | GATC | M.Sen8038ORF860P |
| 865 | DNA-binding protein | |||
| 985 | 202 aa hypothetical protein | |||
| 990 | M | M.SmapR478ORF272P (100% identity) | M.Sen8038ORF990P | |
| 995 | 106 aa hypothetical protein | |||
| 1470 | IS4-like element ISVsa5 family transposase | |||
| 1475 | M | M.Ssp15303DcmP (100% identity) | CCWGG | M.Sen8038Dcm2P |
| 1480 | 55 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7265 | MFS transporter | |||
| 7270 | M | M.Sens679ORF16435P (100% identity) | CAGAG | M.Sen8038ORF7270P |
| 7275 | R | Sens30601ORF17060P (100% identity) | CAGAG | Sen8038ORF7270P |
| 7280 | small effector SsaA | |||