Escherichia coli 1/128 |
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Putative Escherichia coli 1/128 RM systems
Ref: Korotetskiy,I. et al. unpublished
REBASE ref # 33225
| Sequence length: | GenBank #: | |
| Chromosome: | 5,449,567 bp | CP082831 |
| plasmid unnamed: | 186,443 bp | CP082832 |
REBASE acronym: EcoWND1
Org_num: 53888
All begin K8B75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19650 | type IV toxin-antitoxin system AbiEi family | |||
| 19655 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoWND1ORF19660P |
| 19660 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoWND1ORF19660P |
| 19665 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoWND1ORF19660P |
| 19670 | ash family protein | |||
| 21475 | restriction endonuclease | |||
| 21480 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoWND1ORF21480P |
| 21485 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoWND1ORF21480P |
| 21490 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoWND1ORF21480P |
| 21495 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoWND1ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 9815 | phosphohydrolase | |||
| 9820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoWND1DcmP |
| 9825 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoWND1DcmP |
| 9830 | drug/metabolite exporter YedA | |||
| 10685 | antitermination protein | |||
| 10690 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoWND1ORF10690P |
| 10695 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoWND1ORF10690P |
| 10700 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoWND1ORF10690P |
| 10705 | TrmB family transcriptional regulator | |||
| 13715 | DUF1804 family protein | |||
| 13720 | M | M.EspP049ORF3912P (100% identity) | M.EcoWND1ORF13720P | |
| 13725 | phage terminase large subunit | |||
| 13915 | DUF3927 family protein | |||
| 13930 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoWND1ORF13930P |
| 13935 | TrmB family transcriptional regulator | |||
| 16175 | helix-turn-helix domain-containing protein | |||
| 16180 | M | M.KpnYN1ORFGP (89% identity) | M.EcoWND1ORF16180P | |
| 16185 | 71 aa hypothetical protein | |||
| 21815 | McrC family protein | |||
| 21820 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoWND1ORF21825P |
| 21825 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoWND1ORF21825P |
| 21830 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoWND1ORF21825P |
| 21835 | helix-turn-helix domain-containing protein | |||
| 24025 | 555 aa hypothetical protein | |||
| 24030 | R | EcosS3ORF15775P (100% identity) | EcoWND1ORF24035P | |
| 24035 | M | M.EcosS3ORF15775P (100% identity) | M.EcoWND1ORF24035P | |
| 24040 | conjugal transfer protein TraG N-terminal | |||
| plasmid unnamed | ||||
| 26810 | 102 aa hypothetical protein | |||
| 26815 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoWND1ORF26815P | |
| 26820 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9330 | shufflon system plasmid conjugative transfer | |||
| 9335 | R | Ecost88ORF24685P (100% identity) | EcoWND1ORF9340P | |
| 9340 | M | M.EcosS2ORF3675P (100% identity) | M.EcoWND1ORF9340P | |
| 9345 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21805 | glycosyltransferase | |||
| 21810 | R | EcosS3McrBP (100% identity) | EcoWND1McrBP | |
| 21815 | R | EcosS9McrCP (100% identity) | EcoWND1McrCP | |
| 21820 | Alw26I/Eco31I/Esp3I family type II restriction | |||