Escherichia coli PC-NDM34 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli PC-NDM34 RM systems
Ref: Manyahi,J. et al. unpublished
REBASE ref # 33399
| Sequence length: | GenBank #: | |
| Chromosome: | 4,867,020 bp | CP082120 |
| plasmid pIncFIA: | 109,135 bp | CP082121 |
| plasmid pIncFIB: | 108,374 bp | CP082122 |
REBASE acronym: EcoNDM34
Org_num: 53868
All begin K5P75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 440 | 184 aa hypothetical protein | |||
| 445 | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | EcoNDM34ORF455P |
| 450 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoNDM34ORF455P |
| 455 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoNDM34ORF455P |
| 460 | type II toxin-antitoxin system RelB/DinJ family | |||
| 9520 | IS3 family transposase | |||
| 9525 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoNDM34ORF9525P |
| 9530 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoNDM34ORF9525P |
| 9535 | YecA family protein | |||
| 9540 | cold shock domain-containing protein | |||
| 9545 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | EcoNDM34ORF9525P |
| 9550 | M48 family metallopeptidase | |||
| plasmid pIncFIA | ||||
| 24020 | IS1 family transposase | |||
| 24025 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoNDM34ORF24035P |
| 24030 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoNDM34ORF24035P |
| 24035 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoNDM34ORF24035P |
| 24040 | type II toxin-antitoxin system Phd/YefM family | |||
| plasmid pIncFIB | ||||
| 24525 | DNA polymerase III subunit theta | |||
| 24530 | M | M.EcoPM7ORF22985P (100% identity) | M.EcoNDM34ORF24530P | |
| 24535 | S | S.EcoPM7ORF22985P (100% identity) | S.EcoNDM34ORF24530P | |
| 24540 | R | EcoPM7ORF22985P (100% identity) | EcoNDM34ORF24530P | |
| 24545 | 158 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1940 | cell division protein DamX | |||
| 1945 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoNDM34DamP |
| 1950 | ribulose-phosphate 3-epimerase | |||
| 2495 | DUF2556 family protein | |||
| 2500 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoNDM34ORF2500P |
| 2505 | DNA-binding transcriptional regulator Fis | |||
| 9260 | phosphohydrolase | |||
| 9265 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoNDM34DcmP |
| 9270 | V | V.Ecos142DcmP (100% identity) | V.EcoNDM34DcmP | |
| 9275 | drug/metabolite exporter YedA | |||
| 15655 | phosphoadenosine phosphosulfate reductase family | |||
| 15660 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoNDM34ORF15660P |
| 15665 | recombination protein NinB | |||
| 18340 | LexA family transcriptional regulator | |||
| 18345 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoNDM34ORF18345P |
| 18350 | PerC family transcriptional regulator | |||
| plasmid pIncFIA | ||||
| 23925 | 73 aa hypothetical protein | |||
| 23930 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoNDM34ORF23930P |
| 23935 | 102 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14990 | replication endonuclease | |||
| 14995 | M | M.EcoTCMB2ORF10935P (100% identity) | GATC | M.EcoNDM34ORF14995P |
| 15000 | TraR/DksA family transcriptional regulator | |||
| plasmid pIncFIB | ||||
| 24585 | 76 aa hypothetical protein | |||
| 24590 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoNDM34ORF24590P |
| 24595 | 269 aa hypothetical protein | |||