Escherichia coli EC1722-1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli EC1722-1 RM systems
Ref: Zhu,X. unpublished
REBASE ref # 30423
| Sequence length: | GenBank #: | |
| chromosome unnamed1: | 5,041,664 bp | CP081192 |
| plasmid unnamed2: | 158,111 bp | CP081193 |
| plasmid unnamed3: | 105,553 bp | CP081194 |
| plasmid unnamed4: | 84,890 bp | CP081195 |
REBASE acronym: Eco17221
Org_num: 51365
All begin K4F91_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome unnamed1 | ||||
| 9910 | 380 aa hypothetical protein | |||
| 9915 | M | M.EcoSTEC346ORFGP (100% identity) | AGCANNNNNNNTAG | M.Eco17221ORF9915P |
| 9920 | S | S.EcoTX1999ORF2159P (100% identity) | AGCANNNNNNNTAG | S.Eco17221ORF9915P |
| 9925 | R | EcoTX1999ORF2159P (100% identity) | AGCANNNNNNNTAG | Eco17221ORF9915P |
| 9930 | M48 family metallopeptidase | |||
| 20390 | adenine/cytosine-specific restriction | |||
| 20395 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco17221ORF20400P |
| 20400 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco17221ORF20400P |
| 20405 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.Eco17221ORF20400P |
| 20410 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome unnamed1 | ||||
| 1660 | cell division protein DamX | |||
| 1665 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco17221DamP |
| 1670 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco17221ORF2310P |
| 2315 | DNA-binding transcriptional regulator Fis | |||
| 5690 | PerC family transcriptional regulator | |||
| 5695 | M | M.SflFF80ORF18305P (100% identity) | GATC | M.Eco17221ORF5695P |
| 5700 | LexA family transcriptional regulator | |||
| 5895 | 257 aa hypothetical protein | |||
| 5900 | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco17221ORF5900P | |
| 5905 | R | EcoTIF10ORFCP (100% identity) | Eco17221ORF5900P | |
| 5910 | 121 aa hypothetical protein | |||
| 6500 | serine/threonine protein phosphatase | |||
| 6505 | M | M.EfeC23ORF6940P (100% identity) | M.Eco17221ORF6505P | |
| 6510 | PerC family transcriptional regulator | |||
| 9600 | HD domain-containing protein | |||
| 9605 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco17221DcmP |
| 9610 | V | V.SflSTLE3DcmP (100% identity) | V.Eco17221DcmP | |
| 9615 | drug/metabolite exporter YedA | |||
| 17370 | 63 aa hypothetical protein | |||
| 17375 | M | M.EcosE1ORFAP (100% identity) | M.Eco17221ORF17375P | |
| 17380 | TrmB family transcriptional regulator | |||
| plasmid unnamed2 | ||||
| 24925 | 73 aa hypothetical protein | |||
| 24930 | M | M.SflN92ORF24820P (100% identity) | M.Eco17221ORF24930P | |
| 24935 | 101 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 25320 | 103 aa hypothetical protein | |||
| 25325 | M | M.StyR64ORFAP (100% identity) | M.Eco17221ORF25325P | |
| 25330 | 73 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 25860 | 103 aa hypothetical protein | |||
| 25865 | M | M.Sen17222ORF24050P (100% identity) | M.Eco17221ORF25865P | |
| 25870 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome unnamed1 | ||||
| 20385 | GTPase | |||
| 20390 | R | Ssp28760MrrP (100% identity) | Eco17221MrrP | |
| 20395 | type I restriction-modification system | |||
| 20410 | endoribonuclease SymE | |||
| 20415 | R | Ssp28760McrBP (100% identity) | Eco17221McrBP | |
| 20420 | R | Ssp28760McrCP (100% identity) | Eco17221McrCP | |