Escherichia coli XL1-Blue |
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Putative Escherichia coli XL1-Blue RM systems
Ref: Thakkar,M. et al. unpublished
REBASE ref # 32734
Complete sequence: 4,663,358 bp
GenBank #: CP081007
REBASE acronym: EcoXL1B
Org_num: 50767
All begin K3826_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 14040 | adenine/cytosine-specific restriction | |||
| ??? | R | SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | EcoXL1BORF14050P |
| 14050 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoXL1BORF14050P |
| 14055 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoXL1BORF14050P |
| 14060 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10120 | ribulose-phosphate 3-epimerase | |||
| 10125 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXL1BDamP |
| 10130 | cell division protein DamX | |||
| 13735 | drug/metabolite exporter YedA | |||
| 13740 | V | V.SflFF64DcmP (100% identity) | V.EcoXL1BDcmP | |
| 13745 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoXL1BDcmP |
| 13750 | phosphohydrolase | |||
| 16855 | DNA-binding transcriptional regulator Fis | |||
| 16860 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoXL1BORF16860P |
| 16865 | DUF2556 family protein | |||
| 22080 | 101 aa hypothetical protein | |||
| 22085 | M | M.SflN92ORF24820P (100% identity) | M.EcoXL1BORF22085P | |
| 22090 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14035 | GTPase | |||
| 14040 | R | SenHNK130MrrP (100% identity) | EcoXL1BMrrP | |
| 14045 | type I restriction-modification system | |||
| 14060 | endoribonuclease SymE | |||
| 14065 | R | SenHNK130McrBP (100% identity) | EcoXL1BMcrBP | |
| 14070 | R | SenHNK130McrCP (100% identity) | EcoXL1BMcrCP | |
| 14075 | 978 aa hypothetical protein | |||
| 14640 | site-specific DNA recombinase | |||
| 14645 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoXL1BORF14645P |
| 14650 | NADP-dependent isocitrate dehydrogenase | |||