Escherichia coli TOP10 |
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Putative Escherichia coli TOP10 RM systems
Ref: Thakkar,M. et al. unpublished
REBASE ref # 32734
Complete sequence: 4,513,232 bp
GenBank #: CP080620
REBASE acronym: EcoTOP10a
Org_num: 50752
All begin K3F56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15390 | adenine/cytosine-specific restriction | |||
| 15395 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoTOP10aORF15400P |
| 15400 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoTOP10aORF15400P |
| 15405 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoTOP10aORF15400P |
| 15410 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5820 | DUF4060 family protein | |||
| 5825 | M | M.SenHNK130ORF1185P (100% identity) | M.EcoTOP10aORF5825P | |
| 5830 | DUF1317 domain-containing protein | |||
| 10225 | ribulose-phosphate 3-epimerase | |||
| 10230 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoTOP10aDamP |
| 10235 | cell division protein DamX | |||
| 13900 | drug/metabolite exporter YedA | |||
| 13905 | V | V.SflFF64DcmP (100% identity) | V.EcoTOP10aDcmP | |
| 13910 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoTOP10aDcmP |
| 13915 | phosphohydrolase | |||
| 16870 | DNA-binding transcriptional regulator Fis | |||
| 16875 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoTOP10aORF16875P |
| 16880 | DUF2556 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11975 | NADP-dependent isocitrate dehydrogenase | |||
| 11980 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoTOP10aORF11980P |
| 11985 | site-specific DNA recombinase | |||
| 15385 | GTPase | |||
| 15390 | R | SenHNK130MrrP (100% identity) | EcoTOP10aMrrP | |
| 15395 | type I restriction-modification system | |||
| 15410 | endoribonuclease SymE | |||
| 15415 | R | SenHNK130McrBP (100% identity) | EcoTOP10aMcrBP | |
| 15420 | R | SenHNK130McrCP (100% identity) | EcoTOP10aMcrCP | |
| 15425 | 978 aa hypothetical protein | |||