Helicobacter pylori #8 |
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Putative Helicobacter pylori #8 RM systems
Ref: Ichihara,A. et al. Toxins (Basel) 13, 1-10 (2021)
REBASE ref # 32761
Complete sequence: 1,668,167 bp
GenBank #: AP024965
REBASE acronym: Hpys8
Org_num: 50849
All begin OHP008_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1180 | 303 aa hypothetical protein | |||
| 1190 | S | S.Hpy1766ORFCP (97% identity) | S.Hpys8ORF1200P | |
| 1200 | M | M.HpyP30ORFHP (64% identity) | M.Hpys8ORF1200BP | |
| 1210 | M | M.HpyOK95ORFFAP (62% identity) | M.Hpys8ORF1200AP | |
| 1220 | R | HpySG36ORF7345P (72% identity) | Hpys8ORF1200AP | |
| 1230 | R | HpyUM038ORF880P (24% identity) | Hpys8ORF1200BP | |
| 1240 | metal-dependent hydrolase | |||
| 5610 | 155 aa hypothetical protein | |||
| 5620 | M | M.HpyK032ORF5695P (100% identity) | M.Hpys8ORF5620P | |
| 5630 | 65 aa hypothetical protein | |||
| 6260 | phosphatase PAP2 family protein | |||
| 6270 | M | M.HpySG36ORF4175P (96% identity) | M.Hpys8ORF6270P | |
| 6280 | S | S.Hpys8ORF6840P (97% identity) | S.Hpys8ORF6270P | |
| 6290 | R | HpyK021XIIP (98% identity) | Hpys8ORF6270P | |
| 6300 | hydroxyethylthiazole kinase | |||
| 6830 | cadmium, zinc and cobalt-transporting ATPase | |||
| 6840 | S | S.Hpys8ORF6270P (97% identity) | TAAANNNNNNNTGG | S.Hpys8ORF6840P |
| 6850 | 42 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 310 | 149 aa hypothetical protein | |||
| 320 | RM | HpyJO5XX (58% identity) | Hpys8ORF320P | |
| 330 | IS200/IS605 family transposase | |||
| 990 | amidophosphoribosyltransferase | |||
| 1000 | RM | Hpyfe71ORF275P (98% identity) | Hpys8ORF1000P | |
| 1010 | S | S.HpyF221ORFTP (96% identity) | S.Hpys8ORF1000P | |
| 1020 | DNA polymerase I | |||
| 1420 | sodium/proline symporter | |||
| 1430 | M | M1.HpyP87ORFJP (63% identity) | M.Hpys8ORF1430P | |
| 1440 | agmatine deiminase | |||
| 2400 | ubiquinol cytochrome c oxidoreductase cytochrome | |||
| 2410 | R | Hpy192ORFSP (99% identity) | TGCA | Hpys8ORF2420P |
| 2420 | M | M.Hpyfe68ORF7355P (99% identity) | TGCA | M.Hpys8ORF2420P |
| 2430 | 67 aa hypothetical protein | |||
| 2840 | HrgA protein | |||
| ??? | M | M.Hpyfe48ORF6625P (97% identity) | M.Hpys8ORF2850P | |
| 2860 | 146 aa hypothetical protein | |||
| 4460 | exodeoxyribonuclease 7 large subunit | |||
| 4470 | M | M.HpyK032IV (100% identity) | TCGA | M.Hpys8ORF4470P |
| 4480 | 204 aa hypothetical protein | |||
| 4480 | 204 aa hypothetical protein | |||
| ??? | R | HpyK116IIP (99% identity) | CCGG | Hpys8ORF4510P |
| 4510 | M | M.HpyK115III (100% identity) | CCGG | M.Hpys8ORF4510P |
| 4520 | chaperone protein ClpB | |||
| 4980 | peptidoglycan deacetylase | |||
| 4990 | R | HpySP601VP (71% identity) | Hpys8ORF5020P | |
| 5000 | 92 aa hypothetical protein | |||
| 5010 | 290 aa hypothetical protein | |||
| 5020 | M | M.Hpyfe53ORF5510P (60% identity) | M.Hpys8ORF5020P | |
| 5030 | 125 aa hypothetical protein | |||
| 5400 | elongation factor 4 | |||
| 5410 | M | M.Hpyfe118ORF5530P (100% identity) | M.Hpys8ORF5410P | |
| 5420 | 156 aa hypothetical protein | |||
| 8910 | DNA helicase | |||
| 8920 | M | M.HpyCHN3VIII (97% identity) | GTNNAC | M.Hpys8ORF8920P |
| 8930 | R | HpyK023XP (94% identity) | GTNNAC | Hpys8ORF8920P |
| 8940 | flagellar basal body protein | |||
| 9250 | 51 aa hypothetical protein | |||
| 9260 | M | M.HpyK032VIII (58% identity) | M.Hpys8ORF9260P | |
| 9270 | R | HpyK032VIIIP (88% identity) | Hpys8ORF9260P | |
| 9280 | membrane protein | |||
| 10930 | glycolate oxidase iron-sulfur subunit | |||
| 10940 | RM | Hpyfe61ORF4005P (59% identity) | Hpys8ORF10940AP | |
| 10950 | RM | HpyUM085ORF1870P (29% identity) | Hpys8ORF10940BP | |
| 10960 | membrane protein | |||
| 11560 | 97 aa hypothetical protein | |||
| ??? | R | HpyLI29ORF2245P (98% identity) | ACNGT | Hpys8ORF11590P |
| 11590 | M | M.HpyMKM5ORF494P (99% identity) | ACNGT | M.Hpys8ORF11590P |
| 11600 | GTP-binding protein TypA/BipA | |||
| 11610 | 282 aa hypothetical protein | |||
| ??? | M | M.HpyK032ORF5555P (98% identity) | ATTAAT | M.Hpys8ORF11620P |
| 11640 | membrane protein | |||
| 12760 | acetyl-CoA carboxylase biotin carboxylase | |||
| 12770 | M | M.HpyK032X (100% identity) | TCNNGA | M.Hpys8ORF12770P |
| 12780 | R | HpyK032XP (99% identity) | TCNNGA | Hpys8ORF12770P |
| 12790 | 197 aa hypothetical protein | |||
| 13120 | 144 aa hypothetical protein | |||
| 13130 | M | M.HpyOK88ORFC1P (100% identity) | M.Hpys8ORF13130P | |
| 13140 | 67 aa hypothetical protein | |||
| 14010 | hydrolase | |||
| 14020 | M | M.HpyK032I (100% identity) | CATG | M.Hpys8ORF14020P |
| ??? | R | HpyK032IP (75% identity) | CATG | Hpys8ORF14020P |
| 14040 | serine acetyltransferase | |||
| 15420 | protease | |||
| 15430 | R | HpyK032XIP (99% identity) | GANTC | Hpys8ORF15440P |
| 15440 | M | M.HpyV007VI (99% identity) | GANTC | M.Hpys8ORF15440P |
| 15450 | 44 aa hypothetical protein | |||
| 15560 | DNA-binding response regulator | |||
| 15570 | R | HpyK045VIP (29% identity) | Hpys8ORF15610P | |
| 15580 | IS200/IS605 family transposase | |||
| 15590 | transposase | |||
| 15600 | 69 aa hypothetical protein | |||
| 15610 | M | M1.HpyK032XII (99% identity) | GAAGA | M1.Hpys8ORF15610P |
| 15620 | M | M2.HpyK005VII (77% identity) | M2.Hpys8ORF15610P | |
| 15630 | 48 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy3sORF40P (96% identity) | M.Hpys8ORF70P | |
| 100 | R | HpyK154ORF40P (97% identity) | Hpys8ORF70P | |
| 110 | 150 aa hypothetical protein | |||
| 480 | biotin synthase | |||
| 490 | R | HpyL029ORF7035P (64% identity) | Hpys8ORF530AP | |
| 500 | transposase | |||
| 510 | IS200/IS605 family transposase | |||
| 520 | R | HpyHP89ORF6780P (27% identity) | Hpys8ORF530BP | |
| 530 | M | M.Hpyfe118ORF810P (93% identity) | M.Hpys8ORF530P | |
| 540 | 287 aa hypothetical protein | |||
| 630 | rod shape-determining protein MreC | |||
| ??? | R | Hpyfe15ORF6875P (95% identity) | Hpys8ORF660P | |
| 660 | M | M.Hpybs3ORFVP (88% identity) | M.Hpys8ORF660P | |
| 670 | transposase | |||