Helicobacter pylori #6 |
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Putative Helicobacter pylori #6 RM systems
Ref: Ichihara,A. et al. Toxins (Basel) 13, 1-10 (2021)
REBASE ref # 32761
Complete sequence: 1,630,060 bp
GenBank #: AP024964
REBASE acronym: Hpy6
Org_num: 50848
All begin OHP006_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8630 | membrane protein | |||
| 8640 | S | S.Hpy6ORF9250P (48% identity) | S.Hpy6ORF8640P | |
| 8650 | cadmium, zinc and cobalt-transporting ATPase | |||
| 9220 | hydroxyethylthiazole kinase | |||
| 9230 | R | HpyTN2ORF5590P (97% identity) | Hpy6ORF9250P | |
| 9240 | S | S.Hpy6ORF8640P (48% identity) | S.Hpy6ORF9250P | |
| 9250 | M | M.Hpy05ORFXP (97% identity) | M.Hpy6ORF9250P | |
| 9260 | integrase | |||
| 10260 | 85 aa hypothetical protein | |||
| 10270 | M | M.Hpy05ORFPP (97% identity) | M.Hpy6ORF10270P | |
| 10280 | S | S.HpyK023ORF2255P (100% identity) | S.Hpy6ORF10270P | |
| 10290 | polyphosphate kinase | |||
| 15480 | metal-dependent hydrolase | |||
| 15490 | R | HpyUM077ORF3120P (84% identity) | Hpy6ORF15510BP | |
| 15500 | R | HpyK046ORF7245P (20% identity) | Hpy6ORF15510AP | |
| 15510 | M | M.Hpy83ORF1533P (92% identity) | M.Hpy6ORF15510P | |
| 15520 | 258 aa hypothetical protein | |||
| 15530 | S | S.HpyJA109ORF7240P (90% identity) | S.Hpy6ORF15510P | |
| 15540 | flavin-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 100 | 713 aa hypothetical protein | |||
| 110 | RM | HpyK023ORF7160P (92% identity) | Hpy6ORF110P | |
| 120 | transcription termination/antitermination | |||
| 550 | 135 aa hypothetical protein | |||
| 560 | R | Hpyfe110ORF290P (100% identity) | Hpy6ORF570P | |
| 570 | M | M.Hpyfe114ORF270P (100% identity) | M.Hpy6ORF570P | |
| 580 | type I restriction modification protein | |||
| 570 | cytosine-specific methyltransferase | |||
| 580 | S | S.HpyK027ORF6855P (79% identity) | S.Hpy6ORF580P | |
| 590 | DNA polymerase I | |||
| 2830 | 56 aa hypothetical protein | |||
| 2840 | R | HpyOK115ORFAP (76% identity) | CATG | Hpy6ORF2850P |
| 2850 | M | M.Hpyfe99ORF1565P (98% identity) | CATG | M.Hpy6ORF2850P |
| 2860 | hydrolase | |||
| 3680 | 67 aa hypothetical protein | |||
| ??? | M | M.HpyK025XIV (97% identity) | M.Hpy6ORF3700P | |
| 3710 | 144 aa hypothetical protein | |||
| 4040 | 212 aa hypothetical protein | |||
| 4050 | R | HpyMKM5ORF1055P (98% identity) | TCNNGA | Hpy6ORF4060P |
| 4060 | M | M.HpyJ016VI (100% identity) | TCNNGA | M.Hpy6ORF4060P |
| 4070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5360 | DNA helicase | |||
| 5370 | M | M.Hpy5ORF10020P (100% identity) | GTNNAC | M.Hpy6ORF5370P |
| ??? | R | Hpy5ORF10020P (100% identity) | GTNNAC | Hpy6ORF5370P |
| 5390 | flagellar basal body protein | |||
| 5760 | DNA gyrase subunit B | |||
| 5770 | M | M.Hpy72ORF510P (98% identity) | GTAC | M.Hpy6ORF5770P |
| 5780 | R | HpyK109VIIIP (98% identity) | GTAC | Hpy6ORF5770P |
| 5790 | membrane protein | |||
| 7520 | 282 aa hypothetical protein | |||
| 7530 | RM | HpyPF57ORF3445P (93% identity) | Hpy6ORF7530P | |
| 7540 | glycolate oxidase iron-sulfur subunit | |||
| 9960 | catalase-related peroxidase | |||
| 9970 | R | HpyK023ORF2390P (100% identity) | ACGT | Hpy6ORF9980P |
| 9980 | M | M.HpyK023ORF2390P (100% identity) | ACGT | M.Hpy6ORF9980P |
| 9990 | 207 aa hypothetical protein | |||
| 9980 | cytosine-specific methyltransferase | |||
| 9990 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | Hpy6ORF10000P |
| ??? | M | M.Hpy334ORFIP (98% identity) | ACNGT | M.Hpy6ORF10000P |
| 10020 | GTP-binding protein TypA/BipA | |||
| 10030 | 282 aa hypothetical protein | |||
| 10040 | M | M.HpyK119II (98% identity) | ATTAAT | M.Hpy6ORF10040P |
| 10050 | membrane protein | |||
| 11950 | chaperone protein ClpB | |||
| 11960 | M | M.Hpyfe102ORF5915P (100% identity) | CCGG | M.Hpy6ORF11960P |
| 11970 | R | HpyG272VIIIP (96% identity) | CCGG | Hpy6ORF11960P |
| 11980 | 204 aa hypothetical protein | |||
| 11980 | 204 aa hypothetical protein | |||
| 11990 | M | M.HpyK020XI (98% identity) | TCGA | M.Hpy6ORF11990P |
| 12000 | exodeoxyribonuclease 7 large subunit | |||
| 12790 | pseudaminic acid synthase | |||
| 12800 | R | R2.HpyV006ORF900P (88% identity) | R2.Hpy6ORF12800P | |
| 12810 | R | R1.HpyAR9ORF950P (99% identity) | R1.Hpy6ORF12800P | |
| 12820 | elongation factor P | |||
| 13640 | 146 aa hypothetical protein | |||
| 13650 | M | M.HpyK007II (99% identity) | GATC | M.Hpy6ORF13650P |
| 13660 | R | Hpy1829AVIP (97% identity) | GATC | Hpy6ORF13650P |
| 13670 | malonyl CoA-acyl carrier protein transacylase | |||
| 14060 | 78 aa hypothetical protein | |||
| ??? | R | HpyJF13ORF59P (97% identity) | CCTC | Hpy6ORF14090P |
| 14090 | M | M2.HpyK101VIIIP (98% identity) | CCTC | M2.Hpy6ORF14090P |
| 14100 | M | M1.HpyFD568ORFFP (99% identity) | CCTC | M1.Hpy6ORF14090P |
| 14110 | membrane protein | |||
| 14190 | 57 aa hypothetical protein | |||
| 14200 | R | Hpyfe79ORF7090P (47% identity) | Hpy6ORF14230BP | |
| 14210 | R | R2.Hpyfe62ORF6835P (100% identity) | Hpy6ORF14230AP | |
| 14220 | 56 aa hypothetical protein | |||
| 14230 | M | M.HpyP89ORFAP (99% identity) | M.Hpy6ORF14230P | |
| 14240 | DNA methyltransferase | |||
| 14230 | 159 aa hypothetical protein | |||
| ??? | RM | HpyG004ORF6375P (87% identity) | Hpy6ORF14240P | |
| 14260 | nicotinate-nucleotide pyrophosphorylase | |||
| 14360 | DNA-binding response regulator | |||
| 14370 | R | Hpyfe66ORF6980P (99% identity) | GAAGA | Hpy6ORF14380P |
| 14380 | M | M1.Hpyfe110ORF7470P (100% identity) | GAAGA | M1.Hpy6ORF14380P |
| 14390 | M | M1.HpyK023VI (99% identity) | GAAGA | M2.Hpy6ORF14380P |
| 14400 | adenine-specific DNA methyltransferase | |||
| 15270 | 146 aa hypothetical protein | |||
| 15280 | R | HpyK023XIIIP (99% identity) | TGCA | Hpy6ORF15290P |
| 15290 | M | M.HpyK042II (99% identity) | TGCA | M.Hpy6ORF15290P |
| 15300 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyK050ORF7255P (97% identity) | M.Hpy6ORF70P | |
| 90 | R | HpyTW03XVP (97% identity) | Hpy6ORF70P | |
| 100 | 713 aa hypothetical protein | |||
| 1250 | biotin synthase | |||
| 1260 | R | HpyUM065ORF3390P (96% identity) | Hpy6ORF1270P | |
| ??? | M | M.Hpy4109ORFBP (96% identity) | M.Hpy6ORF1270P | |
| 1290 | 213 aa hypothetical protein | |||
| 14390 | methyltransferase | |||
| 14400 | M | M.HpyPF16XVII (98% identity) | M.Hpy6ORF14400P | |
| 14410 | R | Hpy90ORF35P (96% identity) | Hpy6ORF14400P | |
| 14420 | rod shape-determining protein MreC | |||