Helicobacter pylori #5 |
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Putative Helicobacter pylori #5 RM systems
Ref: Ichihara,A. et al. Toxins (Basel) 13, 1-10 (2021)
REBASE ref # 32761
Complete sequence: 1,608,283 bp
GenBank #: AP024963
REBASE acronym: Hpy5
Org_num: 50847
All begin OHP005_, OHP005_r
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5560 | polyphosphate kinase | |||
| 5570 | S | S.HpyHP76ORF2480P (99% identity) | S.Hpy5ORF5580P | |
| 5580 | M | M.HpyOK302ORFTP (96% identity) | M.Hpy5ORF5580P | |
| 5590 | R | Hpy928ORFOP (88% identity) | Hpy5ORF5580BP | |
| 5600 | R | HpyJ013ORF2340P (19% identity) | Hpy5ORF5580AP | |
| 5610 | 631 aa hypothetical protein | |||
| 8880 | membrane protein | |||
| 8890 | S | S.HpyF209ORF521P (98% identity) | S.Hpy5ORF8890P | |
| 8900 | cadmium, zinc and cobalt-transporting ATPase | |||
| 9440 | hydroxyethylthiazole kinase | |||
| 9450 | R | HpyK008ORF2545P (97% identity) | Hpy5ORF9470P | |
| 9460 | S | S.HpyR07ORF3975P (92% identity) | S.Hpy5ORF9470P | |
| 9470 | M | M.HpyHP76ORF2750P (90% identity) | M.Hpy5ORF9470P | |
| 9480 | phosphatase PAP2 family protein | |||
| 15570 | metal-dependent hydrolase | |||
| 15580 | R | HpyHP82XVIIP (96% identity) | Hpy5ORF15590P | |
| 15590 | M | M.HpyOki128ORF6305P (26% identity) | M.Hpy5ORF15590AP | |
| 15600 | M | M.HpyJA112VII (63% identity) | M.Hpy5ORF15590BP | |
| 15610 | S | S.HpyMKM1ORF1442P (97% identity) | S.Hpy5ORF15590P | |
| 15620 | flavin-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | DEAD/DEAH box helicase | |||
| 100 | RM | HpyTN2ORF14560P (89% identity) | Hpy5ORF100P | |
| 110 | transcription termination/antitermination | |||
| 240 | membrane protein | |||
| ??? | R | HpyJ016IVP (99% identity) | CCATC | Hpy5ORF270P |
| 270 | M | M2.HpyJA107IV (99% identity) | CCATC | M1.Hpy5ORF270P |
| 280 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpy5ORF270P |
| 290 | permease | |||
| 540 | amidophosphoribosyltransferase | |||
| 550 | RM | HpyOK44ORFEP (98% identity) | Hpy5ORF550P | |
| 560 | S | S1.HpyK004ORF6870P (98% identity) | S1.Hpy5ORF550P | |
| 570 | S | S.HpyF210ORF1420P (91% identity) | S2.Hpy5ORF550P | |
| 580 | DNA polymerase I | |||
| 1370 | nicotinate-nucleotide pyrophosphorylase | |||
| 1380 | RM | HpySG17ORF290P (68% identity) | Hpy5ORF1380P | |
| 1390 | 230 aa hypothetical protein | |||
| 1400 | 72 aa hypothetical protein | |||
| 1410 | M | M.HpyP98ORFBP (100% identity) | M.Hpy5ORF1410P | |
| 1420 | 56 aa hypothetical protein | |||
| 1430 | R | R2.Hpyfe62ORF6835P (100% identity) | Hpy5ORF1410AP | |
| 1440 | R | HpySG24VIP (46% identity) | Hpy5ORF1410BP | |
| 1450 | protease | |||
| 1520 | membrane protein | |||
| 1530 | M | M1.HpyF209ORF60P (100% identity) | CCTC | M1.Hpy5ORF1530P |
| 1540 | M | M2.HpyP30ORFMP (79% identity) | CCTC | M2.Hpy5ORF1530P |
| 1550 | sodium/proline symporter | |||
| 2370 | 146 aa hypothetical protein | |||
| 2380 | M | M.HpyJSHR3ORF2930P (99% identity) | GATC | M.Hpy5ORF2380P |
| ??? | R | HpyJSHR6ORF12640P (100% identity) | GATC | Hpy5ORF2380P |
| 2410 | malonyl CoA-acyl carrier protein transacylase | |||
| 3770 | exodeoxyribonuclease 7 large subunit | |||
| 3780 | M | M.Hpy3401ORF3810P (98% identity) | TCGA | M.Hpy5ORF3780P |
| 3790 | 204 aa hypothetical protein | |||
| 3790 | 204 aa hypothetical protein | |||
| 3800 | R | HpyG272VIIIP (95% identity) | CCGG | Hpy5ORF3810P |
| 3810 | M | M.HpyP98ORFAP (100% identity) | CCGG | M.Hpy5ORF3810P |
| 3820 | chaperone protein ClpB | |||
| 4290 | peptidoglycan deacetylase | |||
| 4300 | R | HpyF228ORF3440P (100% identity) | CTNAG | Hpy5ORF4310P |
| 4310 | M | M.HpyF228ORFJP (100% identity) | CTNAG | M.Hpy5ORF4310P |
| 4320 | 125 aa hypothetical protein | |||
| 5750 | membrane protein | |||
| 5760 | M | M.HpyJ026II (99% identity) | ATTAAT | M.Hpy5ORF5760P |
| 5770 | 282 aa hypothetical protein | |||
| 5780 | GTP-binding protein TypA/BipA | |||
| 5790 | M | M.Hpy1829AIII (99% identity) | ACNGT | M.Hpy5ORF5790P |
| 5800 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | Hpy5ORF5790P |
| 5810 | cytosine-specific methyltransferase | |||
| 5800 | 207 aa hypothetical protein | |||
| 5810 | M | M.Hpyfe80ORF4760P (99% identity) | ACGT | M.Hpy5ORF5810P |
| ??? | R | Hpyfe4ORF4745P (98% identity) | ACGT | Hpy5ORF5810P |
| 5840 | catalase-related peroxidase | |||
| 6010 | DNA gyrase subunit B | |||
| 6020 | M | M.HpyMKF10ORF897P (99% identity) | GTAC | M.Hpy5ORF6020P |
| 6030 | R | HpyMKF10ORF897P (100% identity) | GTAC | Hpy5ORF6020P |
| 6040 | membrane protein | |||
| 10000 | flagellar basal body protein | |||
| ??? | R | Hpy6ORF5370P (100% identity) | GTNNAC | Hpy5ORF10020P |
| 10020 | M | M.Hpy6ORF5370P (100% identity) | GTNNAC | M.Hpy5ORF10020P |
| 10030 | DNA helicase | |||
| 11360 | acetyl-CoA carboxylase biotin carboxylase | |||
| 11370 | M | M.Hpy24ORF1037P (100% identity) | TCNNGA | M.Hpy5ORF11370P |
| 11380 | R | Hpy3401ORF11550P (100% identity) | TCNNGA | Hpy5ORF11370P |
| 11390 | 212 aa hypothetical protein | |||
| 11690 | 144 aa hypothetical protein | |||
| 11700 | M | M.HpyJSHR6ORF3630P (99% identity) | GCGC | M.Hpy5ORF11700P |
| 11710 | 67 aa hypothetical protein | |||
| 12540 | hydrolase | |||
| 12550 | M | M.HpyMKF3ORF1171P (99% identity) | CATG | M.Hpy5ORF12550P |
| 12560 | R | HpyMKF3ORF1171P (55% identity) | CATG | Hpy5ORF12550P |
| 12570 | 82 aa hypothetical protein | |||
| 15310 | 253 aa hypothetical protein | |||
| 15320 | M | M.HpyK013ORF7530P (100% identity) | M.Hpy5ORF15320P | |
| 15330 | 243 aa hypothetical protein | |||
| 15320 | cytosine-specific methyltransferase | |||
| 15330 | R | HpyUBN18ORFZP (100% identity) | TGCA | Hpy5ORF15340P |
| 15340 | M | M.HpyJ013II (100% identity) | TGCA | M.Hpy5ORF15340P |
| 15350 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy83ORF1518P (99% identity) | M.Hpy5ORF70P | |
| 90 | R | Hpy83ORF1518P (97% identity) | Hpy5ORF70P | |
| 100 | type II restriction endonuclease | |||
| 20 | uncharacterized protein | |||
| 1240 | R | HpyJF13ORF34P (60% identity) | Hpy5ORF1250P | |
| ??? | M | M.HpyTW09XIII (97% identity) | M.Hpy5ORF1250P | |
| 1270 | DNA-binding response regulator | |||
| 14060 | 109 aa hypothetical protein | |||
| 14070 | M | M.HpyBS07ORF4410P (97% identity) | M.Hpy5ORF14070P | |
| 14080 | R | HpyUM065ORF3390P (97% identity) | Hpy5ORF14070P | |
| 14090 | biotin synthase | |||