Helicobacter pylori #3 |
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Putative Helicobacter pylori #3 RM systems
Ref: Ichihara,A. et al. Toxins (Basel) 13, 1-10 (2021)
REBASE ref # 32761
Complete sequence: 1,585,790 bp
GenBank #: AP024962
REBASE acronym: Hpy3
Org_num: 50846
All begin OHP003_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 40 | flavin-dependent thymidylate synthase | |||
| 50 | S | S.HpyF019XIII (87% identity) | S.Hpy3ORF70P | |
| 60 | 258 aa hypothetical protein | |||
| 70 | M | M.HpyJ029ORF7255P (59% identity) | M.Hpy3ORF70BP | |
| 80 | M | M.Hpy83ORF1533P (37% identity) | M.Hpy3ORF70AP | |
| 90 | R | HpyOK13ORFIP (39% identity) | Hpy3ORF70AP | |
| 100 | R | Hpy4125ORFDP (57% identity) | Hpy3ORF70BP | |
| 110 | metal-dependent hydrolase | |||
| 5460 | polyphosphate kinase | |||
| 5470 | S | S.HpyKG10ORF2200P (98% identity) | S.Hpy3ORF5480P | |
| 5480 | M | M.Hpyfe66ORF4865P (96% identity) | M.Hpy3ORF5480P | |
| 5490 | R | Hpyfe118ORF5095P (97% identity) | Hpy3ORF5480BP | |
| 5500 | R | Hpyfe70ORF4990P (19% identity) | Hpy3ORF5480AP | |
| 5510 | 631 aa hypothetical protein | |||
| 8670 | membrane protein | |||
| 8680 | S | S.Hpy3ORF9290P (97% identity) | S.Hpy3ORF8680P | |
| 8690 | cadmium, zinc and cobalt-transporting ATPase | |||
| 9260 | hydroxyethylthiazole kinase | |||
| 9270 | R | HpyF234ORFKP (85% identity) | Hpy3ORF9290P | |
| 9280 | S | S.Hpy3ORF8680P (97% identity) | S.Hpy3ORF9290P | |
| 9290 | M | M.HpyMKM1ORF853P (96% identity) | M.Hpy3ORF9290P | |
| 9300 | 156 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 280 | 67 aa hypothetical protein | |||
| 290 | M | M.HpyJ015IX (100% identity) | TGCA | M.Hpy3ORF290P |
| ??? | R | HpyOK318ORFMP (99% identity) | TGCA | Hpy3ORF290P |
| 320 | elongation factor Ts | |||
| 1270 | nicotinate-nucleotide pyrophosphorylase | |||
| 1280 | RM | HpyOK303ORFMP (65% identity) | Hpy3ORF1280P | |
| 1290 | 274 aa hypothetical protein | |||
| 1290 | 274 aa hypothetical protein | |||
| 1300 | M | M.Hpyfe64ORF7055P (99% identity) | GANTC | M.Hpy3ORF1300P |
| 1310 | R | HpyJ019VIP (98% identity) | GANTC | Hpy3ORF1300P |
| 1320 | 72 aa hypothetical protein | |||
| 1410 | 54 aa hypothetical protein | |||
| 1420 | M | M1.HpyPU001IV (99% identity) | CCTC | M1.Hpy3ORF1420P |
| 1430 | M | M2.HpyJ017VIIP (99% identity) | CCTC | M2.Hpy3ORF1420P |
| 1440 | R | Hpyfe51ORF7020P (96% identity) | CCTC | Hpy3ORF1420P |
| 1450 | 115 aa hypothetical protein | |||
| 1440 | 407 aa hypothetical protein | |||
| ??? | R | Hpyfe6ORF6715P (98% identity) | CCTTC | Hpy3ORF1470P |
| 1470 | M | M.Hpyfe6ORF6715P (99% identity) | CCTTC | M.Hpy3ORF1470P |
| 1480 | sodium/proline symporter | |||
| 2310 | 146 aa hypothetical protein | |||
| 2320 | M | M.Hpy24ORF151P (98% identity) | GATC | M.Hpy3ORF2320P |
| 2330 | 118 aa hypothetical protein | |||
| 3670 | exodeoxyribonuclease 7 large subunit | |||
| 3680 | R | HpyBR12XIIP (100% identity) | Hpy3ORF3680P | |
| 3690 | 105 aa hypothetical protein | |||
| 4600 | elongation factor 4 | |||
| 4610 | M | M.Hpyoh1ORF4535P (100% identity) | M.Hpy3ORF4610P | |
| 4620 | 99 aa hypothetical protein | |||
| 5640 | membrane protein | |||
| 5650 | M | M.HpySG15III (99% identity) | ATTAAT | M.Hpy3ORF5650P |
| 5660 | 282 aa hypothetical protein | |||
| 5670 | GTP-binding protein TypA/BipA | |||
| ??? | M | M.HpyF211ORF483P (97% identity) | ACNGT | M.Hpy3ORF5680P |
| ??? | R | HpyMKM6ORF482P (98% identity) | ACNGT | Hpy3ORF5680P |
| 5720 | cytosine-specific methyltransferase | |||
| 5710 | 159 aa hypothetical protein | |||
| 5720 | M | M.Hpy53ORFUP (99% identity) | ACGT | M.Hpy3ORF5720P |
| ??? | R | Hpyfe101ORF4780P (73% identity) | ACGT | Hpy3ORF5720P |
| 5740 | catalase-related peroxidase | |||
| 7520 | glycolate oxidase iron-sulfur subunit | |||
| 7530 | RM | HpyJA107ORF3395P (25% identity) | Hpy3ORF7530AP | |
| 7540 | RM | HpyAR8ORF3340P (53% identity) | Hpy3ORF7530BP | |
| 7550 | membrane protein | |||
| 7700 | polysaccharide biosynthesis protein | |||
| 7710 | M | M.HpySG07ORF3370P (99% identity) | M.Hpy3ORF7710P | |
| 7720 | R | Hpyfe85ORF3790P (100% identity) | Hpy3ORF7710P | |
| 7730 | 133 aa hypothetical protein | |||
| 9290 | type I restriction-modification system subunit | |||
| ??? | M | M.HpyOK306ORFA1P (99% identity) | M.Hpy3ORF9300P | |
| 9320 | R | HpyID5ORF4340P (88% identity) | Hpy3ORF9300P | |
| 9330 | phosphatase PAP2 family protein | |||
| 9840 | flagellar basal body protein | |||
| 9850 | R | HpyK111ORF4445P (96% identity) | GTNNAC | Hpy3ORF9860P |
| 9860 | M | M.HpyID1IX (98% identity) | GTNNAC | M.Hpy3ORF9860P |
| 9870 | DNA helicase | |||
| 11120 | acetyl-CoA carboxylase biotin carboxylase | |||
| 11130 | M | M.Hpyfe82ORF2040P (100% identity) | TCNNGA | M.Hpy3ORF11130P |
| 11140 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpy3ORF11130P |
| 11150 | 214 aa hypothetical protein | |||
| 11460 | 144 aa hypothetical protein | |||
| 11470 | M | M.HpyT028XVI (98% identity) | GCGC | M.Hpy3ORF11470P |
| 11480 | 67 aa hypothetical protein | |||
| 12320 | hydrolase | |||
| 12330 | M | M.HpyOK311ORFHP (99% identity) | CATG | M.Hpy3ORF12330P |
| ??? | R | HpyOK34ORFA1P (73% identity) | CATG | Hpy3ORF12330P |
| 12350 | serine acetyltransferase | |||
| 14450 | cytochrome c biogenesis protein CcsA | |||
| 14460 | R | Hpyfe56ORF355P (99% identity) | Hpy3ORF14470P | |
| 14470 | M | M2.HpySW08ORF7490P (99% identity) | M1.Hpy3ORF14470P | |
| 14480 | M | M2.Hpy38ORF1412P (100% identity) | M2.Hpy3ORF14470P | |
| 14490 | 103 aa hypothetical protein | |||
| 14580 | DNA polymerase I | |||
| 14590 | S | S.Hpy673ORF7355P (98% identity) | S2.Hpy3ORF14610P | |
| 14600 | S | S1.HpyF93ORFYP (96% identity) | S1.Hpy3ORF14610P | |
| 14610 | RM | HpyK112ORF6940P (99% identity) | Hpy3ORF14610P | |
| 14620 | amidophosphoribosyltransferase | |||
| 14870 | permease | |||
| 14880 | M | M2.Hpyfe71ORF135P (99% identity) | CCATC | M1.Hpy3ORF14880P |
| 14890 | M | M2.HpyBR12III (100% identity) | CCATC | M2.Hpy3ORF14880P |
| 14900 | R | HpyBR12IIIP (94% identity) | CCATC | Hpy3ORF14880P |
| 14910 | membrane protein | |||
| 15080 | 281 aa hypothetical protein | |||
| 15090 | RM | HpyTW05ORF7190P (92% identity) | Hpy3ORF15090P | |
| 15100 | DEAD/DEAH box helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13860 | 144 aa hypothetical protein | |||
| 13870 | M | M.Hpyfe103ORF630P (97% identity) | M.Hpy3ORF13870P | |
| 13880 | R | HpyOK306ORFHP (89% identity) | Hpy3ORF13870P | |
| 13890 | biotin synthase | |||
| 15090 | type II restriction endonuclease Eco57I subunit | |||
| 15100 | R | HpySG32ORF7480P (96% identity) | Hpy3ORF15110P | |
| ??? | M | M.HpyF232ORFFP (95% identity) | M.Hpy3ORF15110P | |
| 15130 | ATP-dependent DNA helicase RecG | |||