Escherichia coli PK5086 |
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Putative Escherichia coli PK5086 RM systems
Ref: Mohsin,M. et al. unpublished
REBASE ref # 31850
| Sequence length: | GenBank #: | |
| Chromosome: | 4,746,945 bp | CP080370 |
| plasmid pPK5086-95kb: | 95,348 bp | CP080373 |
| plasmid pPK5086-97kb: | 97,614 bp | CP080372 |
| plasmid pPK5086-tetX: | 100,261 bp | CP080371 |
REBASE acronym: EcoPK5086
Org_num: 50714
All begin K0H55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5755 | IS1 family transposase | |||
| 5760 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoPK5086ORF5770P |
| 5765 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoPK5086ORF5770P |
| 5770 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoPK5086ORF5770P |
| 5775 | integrase core domain-containing protein | |||
| 13695 | transcription factor | |||
| 13700 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoPK5086ORF13700P |
| 13705 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoPK5086ORF13700P |
| 13710 | DUF4433 domain-containing protein | |||
| 13715 | macro domain-containing protein | |||
| 13720 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoPK5086ORF13700P |
| 13725 | M48 family metallopeptidase | |||
| plasmid pPK5086-97kb | ||||
| 23690 | IS1 family transposase | |||
| 23695 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoPK5086ORF23705P |
| 23700 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoPK5086ORF23705P |
| 23705 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoPK5086ORF23705P |
| 23710 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1950 | cell division protein DamX | |||
| 1955 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPK5086DamP |
| 1960 | ribulose-phosphate 3-epimerase | |||
| 2580 | DUF2556 family protein | |||
| 2585 | M | M.Ssp28760ORF20045P (99% identity) | ATGCAT | M.EcoPK5086ORF2585P |
| 2590 | DNA-binding transcriptional regulator Fis | |||
| 9005 | phosphohydrolase | |||
| 9010 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoPK5086DcmP |
| 9015 | V | V.SsoSE61DcmP (100% identity) | V.EcoPK5086DcmP | |
| 9020 | drug/metabolite exporter YedA | |||
| plasmid pPK5086-95kb | ||||
| 24375 | TerB family tellurite resistance protein | |||
| 24395 | M | M.Eco312ORF23945P (99% identity) | M.EcoPK5086ORF24395P | |
| 24400 | recombination-associated protein RdgC | |||
| plasmid pPK5086-97kb | ||||
| 23595 | 73 aa hypothetical protein | |||
| 23600 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoPK5086ORF23600P |
| 23605 | 102 aa hypothetical protein | |||
| plasmid pPK5086-tetX | ||||
| 23015 | 102 aa hypothetical protein | |||
| 23020 | M | M.SenST46ORF25580P (100% identity) | M.EcoPK5086ORF23020P | |
| 23025 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pPK5086-95kb | ||||
| 24120 | modulator protein | |||
| 24125 | M | M.EcoST361ORF24765P (100% identity) | CAGCAG | M.EcoPK5086ORF24125P |
| 24130 | R | EcoST361ORF24765P (100% identity) | CAGCAG | EcoPK5086ORF24125P |
| 24135 | maturation control protein | |||
| plasmid pPK5086-tetX | ||||
| 22920 | 67 aa hypothetical protein | |||
| 22925 | M | M.SspS13ORF650P (100% identity) | M.EcoPK5086ORF22925P | |
| 22930 | R | SspS13ORF650P (100% identity) | EcoPK5086ORF22925P | |
| 22935 | tRNA modification GTPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13010 | NADP-dependent isocitrate dehydrogenase | |||
| 13015 | R | EcosEC27McrCP (100% identity) | EcoPK5086McrCP | |
| 13020 | R | EcoteDMcrBP (100% identity) | EcoPK5086McrBP | |
| 13025 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14900 | replication endonuclease | |||
| 14905 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoPK5086ORF14905P |
| 14910 | TraR/DksA family transcriptional regulator | |||