Escherichia coli O139:H1 W13-16 |
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Putative Escherichia coli O139:H1 W13-16 RM systems
Ref: Auvray,F. et al. unpublished
REBASE ref # 32729
| Sequence length: | GenBank #: | |
| Chromosome: | 5,091,917 bp | CP080235 |
| plasmid pW1316-1: | 83,443 bp | CP080236 |
REBASE acronym: EcoW1316
Org_num: 50705
All begin KZW92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 905 | HNH endonuclease family protein | |||
| 910 | M | M.EcoEC581ORF6620P (92% identity) | M.EcoW1316ORF910P | |
| 915 | IS5-like element ISKpn26 family transposase | |||
| 920 | R | EcoW1316ORF930P (100% identity) | EcoW1316ORF910P | |
| 925 | S | S.EcoW1316ORF930P (100% identity) | S.EcoW1316ORF910P | |
| 930 | type I restriction-modification system subunit | |||
| 915 | IS5-like element ISKpn26 family transposase | |||
| 920 | R | EcoW1316ORF910P (100% identity) | EcoW1316ORF930P | |
| 925 | S | S.EcoW1316ORF910P (100% identity) | S.EcoW1316ORF930P | |
| 930 | M | M.EcoP1525ORF9745P (100% identity) | M.EcoW1316ORF930P | |
| 935 | GTPase family protein | |||
| 10010 | integrase core domain-containing protein | |||
| 10015 | M | M.SenS688ORF13495P (100% identity) | M.EcoW1316ORF10015P | |
| 10020 | S | S.Sen12509ORF5865P (63% identity) | S.EcoW1316ORF10015P | |
| 10025 | IS1 family transposase | |||
| 21110 | ash family protein | |||
| 21115 | S | S.EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | S.EcoW1316ORF21120P |
| 21120 | M | M.EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | M.EcoW1316ORF21120P |
| 21125 | IS3 family transposase | |||
| 21130 | R | EcoP1525ORF5305P (95% identity) | CAACNNNNGTT | EcoW1316ORF21120P |
| 21135 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 500 | TrmB family transcriptional regulator | |||
| 505 | M | M.EcoW26ORF35400P (100% identity) | M.EcoW1316ORF505P | |
| 510 | 92 aa hypothetical protein | |||
| 2190 | TrmB family transcriptional regulator | |||
| 2195 | M | M.EcoP1525ORF11005P (100% identity) | M.EcoW1316ORF2195P | |
| 2215 | Shiga toxin Stx2e subunit A | |||
| 6335 | drug/metabolite exporter YedA | |||
| 6340 | V | V.EcoP1525DcmP (100% identity) | V.EcoW1316DcmP | |
| 6345 | M | M.EcoP1525DcmP (100% identity) | CCWGG | M.EcoW1316DcmP |
| 6350 | phosphohydrolase | |||
| 13325 | DNA-binding transcriptional regulator Fis | |||
| 13330 | M | M.EcoP1525ORF22125P (100% identity) | ATGCAT | M.EcoW1316ORF13330P |
| 13335 | DUF2556 family protein | |||
| 13855 | ribulose-phosphate 3-epimerase | |||
| 13860 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoW1316DamP |
| 13865 | cell division protein DamX | |||
| plasmid pW1316-1 | ||||
| 25020 | 101 aa hypothetical protein | |||
| 25025 | M | M.SflFF87ORF23240P (100% identity) | M.EcoW1316ORF25025P | |
| 25030 | 73 aa hypothetical protein | |||