Thiothrix caldifontis DSM 21228 |
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Putative Thiothrix caldifontis DSM 21228 RM systems
Ref: Varghese,N. and Submissions,S. unpublished
REBASE ref # 22454
Contig set: 3,931,598 bp
GenBank #: FNQP00000000 (NZ_FNQP00000000)
REBASE acronym: Tca21228
Org_num: 50050
All begin SAMN05660964_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1239 | R | Tla21227ORFBP (84% identity) | Tca21228ORF1239P | |
| 1240 | 244 aa hypothetical protein | |||
| 3237 | cell filamentation protein | |||
| 3238 | S | S1.AcaK524ORF5965P (30% identity) | S.Tca21228ORF3240P | |
| 3239 | Predicted nuclease of restriction | |||
| 3240 | M | M.Tla21227ORFDP (94% identity) | M.Tca21228ORF3240P | |
| 3241 | Predicted NAD/FAD-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1934 | 106 aa hypothetical protein | |||
| 1935 | M | M.TspQ5ORF12885P (94% identity) | M.Tca21228ORF1935P | |
| 1936 | von Willebrand factor type A domain-containing | |||
| 3649 | nitrogen fixation protein NifX | |||
| 3650 | M | M.TspCT3ORF5395P (80% identity) | M.Tca21228ORF3650P | |
| 3651 | R | TspCT3ORF5395P (77% identity) | Tca21228ORF3650P | |
| 3652 | DNA-binding transcriptional regulator, | |||
| 590 | Diadenosine tetraphosphate (Ap4A) hydrolase | |||
| 591 | M | M.TboBBSDndCP (45% identity) | M.Tca21228DndCP | |
| 592 | DNA sulfur modification protein DndD | |||
| 591 | DNA sulfur modification protein DndC | |||
| 592 | M | M.Dli5ac10DndDP (30% identity) | M.Tca21228DndDP | |
| 593 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T | |||
| 592 | DNA sulfur modification protein DndD | |||
| 593 | R | Tli06511DptHP (36% identity) | Tca21228DptHP | |
| 594 | AAA domain-containing protein, putative AbiEii | |||
| 2151 | 71 aa hypothetical protein | |||
| 2152 | M | M.Rsp17631ORF2562P (57% identity) | M.Tca21228ORF2152P | |
| 2153 | restriction system protein | |||
| 1833 | 454 aa hypothetical protein | |||
| 1834 | M | M.TspA52ORF15860P (92% identity) | M.Tca21228ORF1834P | |
| 1835 | R | TspA52ORF15860P (98% identity) | Tca21228ORF1834P | |
| 1836 | Helix-turn-helix domain-containing protein | |||
| 665 | large subunit ribosomal protein L27 | |||
| 666 | M | M.TspCT3ORF4950P (97% identity) | M.Tca21228ORF666P | |
| 667 | R | TunA1ORF1590P (95% identity) | Tca21228ORF666P | |
| 668 | GTP-binding protein | |||
| 1152 | Fic family protein | |||
| 1153 | RM | Tsp52ORFNP (87% identity) | Tca21228ORF1153P | |
| 1154 | DNA-binding regulatory protein, YebC/PmpR | |||
| 437 | ribonucleoside-diphosphate reductase beta chain | |||
| 438 | M | M.TspASORF14925P (77% identity) | M.Tca21228ORF438P | |
| 439 | ribonucleoside-diphosphate reductase, alpha | |||
| 1219 | 394 aa hypothetical protein | |||
| 1220 | M | M.TspCT3ORF4165P (96% identity) | M.Tca21228ORF1220P | |
| 1221 | R | TspCT3ORF4165P (97% identity) | Tca21228ORF1220P | |
| 1222 | Uncharacterized conserved protein YaeQ, | |||
| 473 | Predicted transcriptional regulator | |||
| 474 | M | M.TspQ5ORF8375P (96% identity) | M.Tca21228ORF474P | |
| 475 | R | TspA52ORF4130P (97% identity) | Tca21228ORF474P | |
| 476 | uncharacterized radical SAM protein YgiQ | |||
| 769 | serine/threonine-protein kinase HipA | |||
| 770 | R | Tla21227ORFAP (96% identity) | Tca21228ORF770P | |
| 771 | 201 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2152 | TaqI-like C-terminal specificity | |||
| 2153 | R | TspA52MrrP (95% identity) | Tca21228MrrP | |
| 2154 | Transglycosylase associated protein | |||