Escherichia coli Ec42 |
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Putative Escherichia coli Ec42 RM systems
Ref: Mahazu,S. et al. unpublished
REBASE ref # 32719
| Sequence length: | GenBank #: | |
| Chromosome: | 4,943,457 bp | CP059119 |
| plasmid pEc42_1: | 171,769 bp | CP059120 |
| plasmid pEc42_2: | 82,943 bp | CP059121 |
REBASE acronym: EcoEc42
Org_num: 50661
All begin H0X94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18310 | GTPase family protein | |||
| 18315 | M | M.Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | M.EcoEc42ORF18315P |
| 18320 | S | S.SdyFF51ORF19255P (100% identity) | AAAYNNNNNCTC | S.EcoEc42ORF18315P |
| 18325 | R | Sfl877IIP (100% identity) | AAAYNNNNNCTC | EcoEc42ORF18315P |
| 18330 | IS5-like element ISKpn26 family transposase | |||
| 18330 | IS5-like element ISKpn26 family transposase | |||
| 18335 | M | M.EcoZ147ORF19115P (87% identity) | M.EcoEc42ORF18335P | |
| 18340 | S | S1.SmaQC11ORF51970P (56% identity) | S.EcoEc42ORF18335P | |
| 18345 | DDE-type integrase/transposase/recombinase | |||
| 20155 | adenine/cytosine-specific restriction | |||
| 20160 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoEc42ORF20165P |
| 20165 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoEc42ORF20165P |
| 20170 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoEc42ORF20165P |
| 20175 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1610 | cell division protein DamX | |||
| 1615 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoEc42DamP |
| 1620 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoEc42ORF2250P |
| 2255 | DNA-binding transcriptional regulator Fis | |||
| 6805 | conserved phage C-terminal domain-containing | |||
| 6810 | M | M.KquC3001ORF7690P (99% identity) | M.EcoEc42ORF6810P | |
| 6815 | RusA family crossover junction | |||
| 7910 | 67 aa hypothetical protein | |||
| 7915 | M | M.SflSTLE1ORF5465P (100% identity) | M.EcoEc42ORF7915P | |
| 7920 | phage holin, lambda family | |||
| 9670 | phosphohydrolase | |||
| 9675 | M | M.EcosEC5DcmP (99% identity) | CCWGG | M.EcoEc42DcmP |
| 9680 | V | V.EcosEC7DcmP (100% identity) | V.EcoEc42DcmP | |
| 9685 | drug/metabolite exporter YedA | |||
| 13690 | RusA family crossover junction | |||
| 13695 | M | M.EcoCH611ORF410P (100% identity) | M.EcoEc42ORF13695P | |
| 13700 | conserved phage C-terminal domain-containing | |||
| plasmid pEc42_1 | ||||
| 24505 | 73 aa hypothetical protein | |||
| 24510 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoEc42ORF24510P | |
| 24515 | 102 aa hypothetical protein | |||
| plasmid pEc42_2 | ||||
| 24735 | 103 aa hypothetical protein | |||
| 24740 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoEc42ORF24740P | |
| 24745 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20150 | GTPase | |||
| 20155 | R | EcosS1MrrP (100% identity) | EcoEc42MrrP | |
| 20160 | type I restriction-modification system | |||