Rhodococcus pyridinivorans YC-JH2 |
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Putative Rhodococcus pyridinivorans YC-JH2 RM systems
Ref: Wang,J. et al. J Hazard Mater 412, 125238 (2021)
REBASE ref # 32930
| Sequence length: | GenBank #: | |
| Chromosome: | 4,959,969 bp | CP050178 |
| plasmid pRJH3: | 85,494 bp | CP050181 |
| plasmid pRJH4: | 89,731 bp | CP050182 |
REBASE acronym: RpyJH2
Org_num: 51440
All begin HBA53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16155 | 689 aa hypothetical protein | |||
| 16160 | M | M.RspChr9ORF3770P (100% identity) | M.RpyJH2ORF16160P | |
| ??? | S | S.RspChr9ORF3770P (100% identity) | S.RpyJH2ORF16160P | |
| 16170 | 70 aa hypothetical protein | |||
| 16175 | calcium-binding protein | |||
| 16180 | IS256 family transposase | |||
| 16185 | 82 aa hypothetical protein | |||
| 16190 | IS5 family transposase | |||
| 16195 | YdcF family protein | |||
| 16200 | DinB family protein | |||
| 16205 | DUF2510 domain-containing protein | |||
| 16210 | DUF4352 domain-containing protein | |||
| 16215 | 159 aa hypothetical protein | |||
| 16220 | R | RspChr9ORF1665P (100% identity) | RpyJH2ORF16160P | |
| 16225 | 257 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13130 | 508 aa hypothetical protein CFC35_33630 | |||
| 13135 | M | M.RspP52ORF7660P (99% identity) | CTCGAG | M.RpyJH2ORF13135P |
| 13140 | V | V.RspP52ORF7660P (100% identity) | V.RpyJH2ORF13135P | |
| 13145 | pimeloyl-CoA dehydrogenase small subunit | |||
| plasmid pRJH3 | ||||
| 25585 | 58 aa hypothetical protein | |||
| 25590 | RM | RspP52ORF24945P (100% identity) | RpyJH2ORF25590P | |
| 25595 | DUF3644 domain-containing protein | |||
| plasmid pRJH4 | ||||
| 25720 | recombinase family protein | |||
| 25725 | M | M.RruY14ORF26510P (69% identity) | M.RpyJH2ORF25725P | |
| 25730 | NgoFVII family restriction endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8315 | DUF1906 domain-containing protein | |||
| 8320 | R | RspXY12MrrP (100% identity) | RpyJH2MrrP | |
| 8325 | carotenoid oxygenase family protein | |||