Sphingopyxis terrae subsp. terrae YC-JH3 |
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Putative Sphingopyxis terrae subsp. terrae YC-JH3 RM systems
Ref: Wang,J. et al. J Hazard Mater 412, 125238 (2021)
REBASE ref # 32930
Complete sequence: 3,742,768 bp
GenBank #: CP050249
REBASE acronym: SteJH3
Org_num: 51683
All begin HBA51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3120 | 282 aa hypothetical protein | |||
| 3125 | R | CmaOT19ORF14435P (78% identity) | SteJH3ORF3140P | |
| 3130 | 176 aa hypothetical protein | |||
| 3135 | S | S.Rpu633ORF25705P (40% identity) | S.SteJH3ORF3140P | |
| 3140 | M | M.SyaF8ORF11620P (87% identity) | M.SteJH3ORF3140P | |
| 3145 | N-6 DNA methylase | |||
| 10125 | M48 family metallopeptidase | |||
| 10130 | R | Mop232BORF21370P (88% identity) | SteJH3ORF10140P | |
| 10135 | S | S1.BspC43ORFEP (40% identity) | S.SteJH3ORF10140P | |
| 10140 | M | M.CspWLORF11025P (92% identity) | M.SteJH3ORF10140P | |
| 10145 | GIY-YIG nuclease family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7455 | SDR family NAD(P)-dependent oxidoreductase | |||
| ??? | M | M.Ste15098ORF14635P (93% identity) | M.SteJH3ORF7460P | |
| 7465 | dihydropteroate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9435 | 147 aa hypothetical protein | |||
| 9440 | R | SzoXJ20ORFHP (89% identity) | SteJH3ORF9450P | |
| 9445 | gamma-glutamylcyclotransferase | |||
| 9450 | M | M.CpaYL7ORF1258P (46% identity) | M.SteJH3ORF9450P | |
| 9455 | DUF4391 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11980 | TM0106 family RecB-like putative nuclease | |||
| 11985 | R | EspHKB08McrBP (68% identity) | SteJH3McrB2P | |
| 11990 | R | EspHKB08McrCP (90% identity) | SteJH3McrC2P | |
| 11995 | 201 aa hypothetical protein | |||
| 12480 | DUF262 domain-containing protein | |||
| 12485 | R | SyaB1McrCP (64% identity) | SteJH3McrCP | |
| 12490 | R | SyaB1McrBP (44% identity) | SteJH3McrBP | |
| 12495 | DUF4268 domain-containing protein | |||