Clostridioides difficile Cd2 |
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Putative Clostridioides difficile Cd2 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,194,564 bp | CP037853 |
| plasmid pCd2_2: | 47,540 bp | CP037854 |
REBASE acronym: CdiCd2
Org_num: 50450
All begin E1H25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1720 | DNA-binding protein | |||
| 1725 | C | C.SanVSI16ORF6495P (100% identity) | C.CdiCd2ORF1730P | |
| 1730 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.CdiCd2ORF1730P |
| 1735 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.CdiCd2ORF1730P |
| 1740 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | CdiCd2ORF1730P |
| 1745 | 424 aa hypothetical protein | |||
| 3780 | ketose-bisphosphate aldolase | |||
| 3785 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd2ORF3785P |
| 3790 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd2ORF3785P |
| 3795 | 102 aa hypothetical protein | |||
| 3800 | nucleotidyltransferase domain-containing | |||
| 3805 | 142 aa hypothetical protein | |||
| 3810 | R | CdiCd8ORF15865P (100% identity) | CANNNNNNNTAAAG | CdiCd2ORF3785P |
| 3815 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3320 | 1078 aa hypothetical protein | |||
| 3325 | M | M.Pdi9689DndEP (100% identity) | M.CdiCd2DndEP | |
| 3330 | DNA sulfur modification protein DndD | |||
| 3325 | DUF1832 domain-containing protein | |||
| 3330 | M | M.Pdi9689DndDP (100% identity) | M.CdiCd2DndDP | |
| 3335 | DNA phosphorothioation system sulfurtransferase | |||
| 3330 | DNA sulfur modification protein DndD | |||
| 3335 | M | M.Pdi9689DndCP (100% identity) | M.CdiCd2DndCP | |
| 3340 | LytTR family transcriptional regulator | |||
| 5080 | Rrf2 family transcriptional regulator | |||
| 5085 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd2ORF5085P |
| 5090 | patatin-like phospholipase family protein | |||
| plasmid pCd2_2 | ||||
| 19725 | N-acetylmuramoyl-L-alanine amidase | |||
| 19730 | M | M.Pdi9689ORF3833P (100% identity) | M.CdiCd2ORF19730P | |
| 19735 | CopY family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8575 | cell division protein | |||
| 8580 | R | CdiM161McrBP (100% identity) | CdiCd2McrBP | |
| 8585 | R | Pdi6602McrCP (100% identity) | CdiCd2McrCP | |
| 8590 | AAA family ATPase | |||