Clostridioides difficile Cd5 |
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Putative Clostridioides difficile Cd5 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
Complete sequence: 4,190,414 bp
GenBank #: CP037840
REBASE acronym: CdiCd5
Org_num: 50458
All begin E1H28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16220 | DUF262 domain-containing protein | |||
| 16225 | R | CdiCd7ORF16225P (100% identity) | GCAYNNNNNNTTC | CdiCd5ORF16250P |
| 16230 | 142 aa hypothetical protein | |||
| 16235 | nucleotidyltransferase domain-containing | |||
| 16240 | 102 aa hypothetical protein | |||
| 16245 | S | S.CdiEW6II (100% identity) | GCAYNNNNNNTTC | S.CdiCd5ORF16250P |
| 16250 | M | M.PdiZ31ORF1268P (100% identity) | GCAYNNNNNNTTC | M.CdiCd5ORF16250P |
| 16255 | ketose-bisphosphate aldolase | |||
| 16780 | 111 aa hypothetical protein | |||
| 16785 | R | CdiS0942ORF16230P (100% identity) | AYGNNNNNNCTG | CdiCd5ORF16810P |
| 16790 | 300 aa hypothetical protein | |||
| 16795 | 106 aa hypothetical protein | |||
| 16800 | 150 aa hypothetical protein | |||
| 16805 | S | S.PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | S.CdiCd5ORF16810P |
| 16810 | M | M.CdiRSS2ORF3900P (100% identity) | AYGNNNNNNCTG | M.CdiCd5ORF16810P |
| 16815 | DEAD/DEAH box helicase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14815 | patatin-like phospholipase family protein | |||
| 14820 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd5ORF14820P |
| 14825 | Rrf2 family transcriptional regulator | |||
| 16900 | 928 aa hypothetical protein | |||
| 16905 | M | M.CdiEW6IV (100% identity) | GAGGAG | M.CdiCd5ORF16905P |
| 16910 | 115 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11285 | AAA family ATPase | |||
| 11290 | R | Pdi630McrCP (100% identity) | CdiCd5McrCP | |
| 11295 | R | Pdi6602McrBP (100% identity) | CdiCd5McrBP | |
| 11300 | cell division protein | |||
| 16215 | ECF transporter S component | |||
| 16220 | R | Pdi6602GmrSDP (100% identity) | CdiCd5GmrSDP | |
| 16225 | DUF4145 domain-containing protein | |||