Clostridioides difficile Cd8 |
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Putative Clostridioides difficile Cd8 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,208,073 bp | CP037831 |
| plasmid pCd8_2: | 47,546 bp | CP037832 |
REBASE acronym: CdiCd8
Org_num: 50461
All begin E1H31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15835 | DUF262 domain-containing protein | |||
| 15840 | R | CdiCd2ORF3785P (100% identity) | CANNNNNNNTAAAG | CdiCd8ORF15865P |
| 15845 | 142 aa hypothetical protein | |||
| 15850 | nucleotidyltransferase domain-containing | |||
| 15855 | 102 aa hypothetical protein | |||
| 15860 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd8ORF15865P |
| 15865 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd8ORF15865P |
| 15870 | ketose-bisphosphate aldolase | |||
| 17900 | 424 aa hypothetical protein | |||
| 17905 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | CdiCd8ORF17915P |
| 17910 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.CdiCd8ORF17915P |
| 17915 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.CdiCd8ORF17915P |
| 17920 | C | C.SanVSI16ORF6495P (100% identity) | C.CdiCd8ORF17915P | |
| 17925 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14550 | patatin-like phospholipase family protein | |||
| 14555 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd8ORF14555P |
| 14560 | Rrf2 family transcriptional regulator | |||
| 16310 | LytTR family transcriptional regulator | |||
| 16315 | M | M.Pdi9689DndCP (100% identity) | M.CdiCd8DndCP | |
| 16320 | DNA sulfur modification protein DndD | |||
| 16315 | DNA phosphorothioation system sulfurtransferase | |||
| 16320 | M | M.Pdi9689DndDP (100% identity) | M.CdiCd8DndDP | |
| 16325 | DUF1832 domain-containing protein | |||
| 16320 | DNA sulfur modification protein DndD | |||
| 16325 | M | M.Pdi9689DndEP (100% identity) | M.CdiCd8DndEP | |
| 16330 | 1078 aa hypothetical protein | |||
| plasmid pCd8_2 | ||||
| 19720 | CopY family transcriptional regulator | |||
| 19725 | M | M.Pdi9689ORF3833P (100% identity) | M.CdiCd8ORF19725P | |
| 19730 | N-acetylmuramoyl-L-alanine amidase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11050 | AAA family ATPase | |||
| 11055 | R | Pdi6602McrCP (100% identity) | CdiCd8McrCP | |
| 11060 | R | CdiM161McrBP (100% identity) | CdiCd8McrBP | |
| 11065 | cell division protein | |||