Clostridioides difficile Cd10 |
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Putative Clostridioides difficile Cd10 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,187,195 bp | CP037827 |
| plasmid pCd10_2: | 46,053 bp | CP037828 |
REBASE acronym: CdiCd10
Org_num: 50441
All begin E1H33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16185 | DUF262 domain-containing protein | |||
| 16190 | R | CdiCd7ORF16225P (100% identity) | GCAYNNNNNNTTC | CdiCd10ORF16215P |
| 16195 | 142 aa hypothetical protein | |||
| 16200 | nucleotidyltransferase domain-containing | |||
| 16205 | 102 aa hypothetical protein | |||
| 16210 | S | S.CdiEW6II (100% identity) | GCAYNNNNNNTTC | S.CdiCd10ORF16215P |
| 16215 | M | M.PdiZ31ORF1268P (100% identity) | GCAYNNNNNNTTC | M.CdiCd10ORF16215P |
| 16220 | ketose-bisphosphate aldolase | |||
| 16745 | 111 aa hypothetical protein | |||
| 16750 | R | CdiS0942ORF16230P (100% identity) | AYGNNNNNNCTG | CdiCd10ORF16775P |
| 16755 | 300 aa hypothetical protein | |||
| 16760 | 106 aa hypothetical protein | |||
| 16765 | 150 aa hypothetical protein | |||
| 16770 | S | S.PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | S.CdiCd10ORF16775P |
| 16775 | M | M.CdiRSS2ORF3900P (100% identity) | AYGNNNNNNCTG | M.CdiCd10ORF16775P |
| 16780 | DEAD/DEAH box helicase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14785 | patatin-like phospholipase family protein | |||
| 14790 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd10ORF14790P |
| 14795 | Rrf2 family transcriptional regulator | |||
| 16865 | 928 aa hypothetical protein | |||
| 16870 | M | M.CdiEW6IV (100% identity) | GAGGAG | M.CdiCd10ORF16870P |
| 16875 | 115 aa hypothetical protein | |||
| plasmid pCd10_2 | ||||
| 19720 | N-acetylmuramoyl-L-alanine amidase | |||
| 19725 | M | M.CdiEW6ORFAP (100% identity) | M.CdiCd10ORF19725P | |
| 19730 | CopY family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11255 | AAA family ATPase | |||
| 11260 | R | Pdi630McrCP (100% identity) | CdiCd10McrCP | |
| 11265 | R | Pdi6602McrBP (100% identity) | CdiCd10McrBP | |
| 11270 | cell division protein | |||
| 16180 | ECF transporter S component | |||
| 16185 | R | Pdi6602GmrSDP (100% identity) | CdiCd10GmrSDP | |
| 16190 | DUF4145 domain-containing protein | |||