Clostridioides difficile Cd11 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridioides difficile Cd11 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,204,887 bp | CP037822 |
| plasmid pCd11_3: | 47,546 bp | CP037824 |
REBASE acronym: CdiCd11
Org_num: 50442
All begin E1H34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15835 | DUF262 domain-containing protein | |||
| 15840 | R | CdiCd8ORF15865P (100% identity) | CANNNNNNNTAAAG | CdiCd11ORF15865P |
| 15845 | 142 aa hypothetical protein | |||
| 15850 | nucleotidyltransferase domain-containing | |||
| 15855 | 102 aa hypothetical protein | |||
| 15860 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd11ORF15865P |
| 15865 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd11ORF15865P |
| 15870 | ketose-bisphosphate aldolase | |||
| 17905 | 424 aa hypothetical protein | |||
| 17910 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | CdiCd11ORF17920P |
| 17915 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.CdiCd11ORF17920P |
| 17920 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.CdiCd11ORF17920P |
| 17925 | C | C.SanVSI16ORF6495P (100% identity) | C.CdiCd11ORF17920P | |
| 17930 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14550 | patatin-like phospholipase family protein | |||
| 14555 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd11ORF14555P |
| 14560 | Rrf2 family transcriptional regulator | |||
| 16310 | LytTR family transcriptional regulator | |||
| 16315 | M | M.Pdi9689DndCP (100% identity) | M.CdiCd11DndCP | |
| 16320 | DNA sulfur modification protein DndD | |||
| 16315 | DNA phosphorothioation system sulfurtransferase | |||
| 16320 | M | M.Pdi9689DndDP (100% identity) | M.CdiCd11DndDP | |
| 16325 | DUF1832 domain-containing protein | |||
| 16320 | DNA sulfur modification protein DndD | |||
| 16325 | M | M.Pdi9689DndEP (100% identity) | M.CdiCd11DndEP | |
| 16330 | 1078 aa hypothetical protein | |||
| plasmid pCd11_3 | ||||
| 20645 | CopY family transcriptional regulator | |||
| 20650 | M | M.Pdi9689ORF3833P (100% identity) | M.CdiCd11ORF20650P | |
| 20655 | N-acetylmuramoyl-L-alanine amidase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11050 | AAA family ATPase | |||
| 11055 | R | Pdi6602McrCP (100% identity) | CdiCd11McrCP | |
| 11060 | R | CdiM161McrBP (100% identity) | CdiCd11McrBP | |
| 11065 | cell division protein | |||