Clostridioides difficile Cd12 |
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Putative Clostridioides difficile Cd12 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
Complete sequence: 4,100,358 bp
GenBank #: CP037821
REBASE acronym: CdiCd12
Org_num: 50443
All begin E1H35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15790 | DUF262 domain-containing protein | |||
| 15795 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | CdiCd12ORF15820P |
| 15800 | 142 aa hypothetical protein | |||
| 15805 | nucleotidyltransferase domain-containing | |||
| 15810 | 102 aa hypothetical protein | |||
| 15815 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd12ORF15820P |
| 15820 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd12ORF15820P |
| 15825 | ketose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2545 | 73 aa hypothetical protein | |||
| 2550 | C | C.PdiZ31ORF415P (100% identity) | C.CdiCd12ORF2555P | |
| 2555 | RM | Cdo002IV (99% identity) | GCMGAAG | CdiCd12ORF2555P |
| 2560 | 224 aa hypothetical protein | |||
| 3635 | SrtB-anchored collagen-binding adhesin | |||
| 3640 | M | M.CdiCd13ORF3645P (100% identity) | M.CdiCd12ORF3640P | |
| 3645 | DUF961 domain-containing protein | |||
| 14450 | patatin-like phospholipase family protein | |||
| 14455 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd12ORF14455P |
| 14460 | Rrf2 family transcriptional regulator | |||
| 16200 | LytTR family transcriptional regulator | |||
| 16205 | M | M.CdiCd13DndCP (100% identity) | M.CdiCd12DndCP | |
| 16210 | DNA sulfur modification protein DndD | |||
| 16205 | DNA phosphorothioation system sulfurtransferase | |||
| 16210 | M | M.CdiST42DndDP (100% identity) | M.CdiCd12DndDP | |
| 16215 | DUF1832 domain-containing protein | |||
| 16210 | DNA sulfur modification protein DndD | |||
| 16215 | M | M.CdiCd24DndEP (100% identity) | M.CdiCd12DndEP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 16215 | DUF1832 domain-containing protein | |||
| ??? | R | CdiST42DptHP (100% identity) | CdiCd12DptHP | |
| 16230 | DNA phosphorothioation-dependent restriction | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 16230 | R | CdiST42DptGP (100% identity) | CdiCd12DptGP | |
| 16235 | DNA phosphorothioation-dependent restriction | |||
| 16230 | DNA phosphorothioation-dependent restriction | |||
| 16235 | R | CdiST42DptFP (100% identity) | CdiCd12DptFP | |
| 16240 | 90 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10675 | AAA family ATPase | |||
| 10680 | R | Cdo002McrCP (100% identity) | CdiCd12McrCP | |
| 10685 | R | Pdi6602McrBP (100% identity) | CdiCd12McrBP | |
| 10690 | cell division protein | |||