Clostridioides difficile Cd13 |
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Putative Clostridioides difficile Cd13 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
Complete sequence: 4,102,642 bp
GenBank #: CP037820
REBASE acronym: CdiCd13
Org_num: 50444
All begin E1H36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10375 | ketose-bisphosphate aldolase | |||
| 10380 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd13ORF10380P |
| 10385 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd13ORF10380P |
| 10390 | 102 aa hypothetical protein | |||
| 10395 | nucleotidyltransferase domain-containing | |||
| 10400 | 142 aa hypothetical protein | |||
| 10405 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | CdiCd13ORF10380P |
| 10410 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3640 | DUF961 domain-containing protein | |||
| 3645 | M | M.CdiCd12ORF3640P (100% identity) | M.CdiCd13ORF3645P | |
| 3650 | SrtB-anchored collagen-binding adhesin | |||
| 4735 | 224 aa hypothetical protein | |||
| 4740 | RM | Cdo002IV (99% identity) | GCMGAAG | CdiCd13ORF4740P |
| 4745 | C | C.PdiZ31ORF415P (100% identity) | C.CdiCd13ORF4740P | |
| 4750 | 73 aa hypothetical protein | |||
| 9960 | 90 aa hypothetical protein | |||
| 9965 | R | CdiST42DptFP (100% identity) | CdiCd13DptFP | |
| 9970 | DNA phosphorothioation-dependent restriction | |||
| 9965 | DNA phosphorothioation-dependent restriction | |||
| 9970 | R | CdiST42DptGP (100% identity) | CdiCd13DptGP | |
| ??? | hypothetical protein | |||
| 9970 | DNA phosphorothioation-dependent restriction | |||
| ??? | R | CdiST42DptHP (99% identity) | CdiCd13DptHP | |
| 9985 | DUF1832 domain-containing protein | |||
| ??? | hypothetical protein | |||
| 9985 | M | M.CdiCd24DndEP (100% identity) | M.CdiCd13DndEP | |
| 9990 | DNA sulfur modification protein DndD | |||
| 9985 | DUF1832 domain-containing protein | |||
| 9990 | M | M.CdiST42DndDP (100% identity) | M.CdiCd13DndDP | |
| 9995 | DNA phosphorothioation system sulfurtransferase | |||
| 9990 | DNA sulfur modification protein DndD | |||
| 9995 | M | M.CdiCd12DndCP (100% identity) | M.CdiCd13DndCP | |
| 10000 | LytTR family transcriptional regulator | |||
| 11740 | Rrf2 family transcriptional regulator | |||
| 11745 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd13ORF11745P |
| 11750 | patatin-like phospholipase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15515 | cell division protein | |||
| 15520 | R | Pdi6602McrBP (100% identity) | CdiCd13McrBP | |
| 15525 | R | Cdo002McrCP (100% identity) | CdiCd13McrCP | |
| 15530 | AAA family ATPase | |||