Clostridioides difficile Cd18 |
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Putative Clostridioides difficile Cd18 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,162,950 bp | CP037806 |
| plasmid pCd18_2: | 136,294 bp | CP037807 |
REBASE acronym: CdiCd18
Org_num: 50449
All begin E1H41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15815 | DUF262 domain-containing protein | |||
| 15820 | R | Pdi9689IIP (100% identity) | CANNNNNNNTAAAG | CdiCd18ORF15845P |
| 15825 | 142 aa hypothetical protein | |||
| 15830 | nucleotidyltransferase domain-containing | |||
| 15835 | 102 aa hypothetical protein | |||
| 15840 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd18ORF15845P |
| 15845 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd18ORF15845P |
| 15850 | ketose-bisphosphate aldolase | |||
| 17475 | 424 aa hypothetical protein | |||
| 17480 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | CdiCd18ORF17490P |
| 17485 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.CdiCd18ORF17490P |
| 17490 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.CdiCd18ORF17490P |
| 17495 | C | C.SanVSI16ORF6495P (100% identity) | C.CdiCd18ORF17490P | |
| 17500 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14525 | patatin-like phospholipase family protein | |||
| 14530 | M | M.Pdi9689I (100% identity) | CAAAAA | M.CdiCd18ORF14530P |
| 14535 | Rrf2 family transcriptional regulator | |||
| 16290 | LytTR family transcriptional regulator | |||
| 16295 | M | M.Pdi9689DndCP (100% identity) | M.CdiCd18DndCP | |
| 16300 | DNA sulfur modification protein DndD | |||
| 16295 | DNA phosphorothioation system sulfurtransferase | |||
| 16300 | M | M.Pdi9689DndDP (100% identity) | M.CdiCd18DndDP | |
| 16305 | DUF1832 domain-containing protein | |||
| 16300 | DNA sulfur modification protein DndD | |||
| 16305 | M | M.Pdi9689DndEP (100% identity) | M.CdiCd18DndEP | |
| 16310 | 1078 aa hypothetical protein | |||
| plasmid pCd18_2 | ||||
| 19455 | 127 aa hypothetical protein | |||
| 19460 | M | M.Pph1296ORF60P (100% identity) | M.CdiCd18ORF19460P | |
| 19465 | site-specific DNA-methyltransferase | |||
| 19460 | Dam family site-specific | |||
| 19465 | M | M.CdiCd28ORF19550P (100% identity) | M.CdiCd18ORF19465P | |
| 19470 | PD-(D/E)XK nuclease family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11000 | AAA family ATPase | |||
| 11005 | R | Pdi9689McrCP (100% identity) | CdiCd18McrCP | |
| 11010 | R | Pdi9689McrBP (100% identity) | CdiCd18McrBP | |
| 11015 | cell division protein | |||