Clostridioides difficile Cd28 |
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Putative Clostridioides difficile Cd28 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,144,795 bp | CP037798 |
| plasmid pCd28_2: | 150,276 bp | CP037799 |
REBASE acronym: CdiCd28
Org_num: 50454
All begin E1H51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14865 | DUF262 domain-containing protein | |||
| 14870 | R | Pdi9689IIP (100% identity) | CANNNNNNNTAAAG | CdiCd28ORF14895P |
| 14875 | 142 aa hypothetical protein | |||
| 14880 | nucleotidyltransferase domain-containing | |||
| 14885 | 102 aa hypothetical protein | |||
| 14890 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd28ORF14895P |
| 14895 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd28ORF14895P |
| 14900 | ketose-bisphosphate aldolase | |||
| 16525 | 424 aa hypothetical protein | |||
| 16530 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | CdiCd28ORF16540P |
| 16535 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.CdiCd28ORF16540P |
| 16540 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.CdiCd28ORF16540P |
| 16545 | C | C.SanVSI16ORF6495P (100% identity) | C.CdiCd28ORF16540P | |
| 16550 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13575 | patatin-like phospholipase family protein | |||
| 13580 | M | M.Pdi9689I (100% identity) | CAAAAA | M.CdiCd28ORF13580P |
| 13585 | Rrf2 family transcriptional regulator | |||
| 15340 | LytTR family transcriptional regulator | |||
| 15345 | M | M.Pdi9689DndCP (100% identity) | M.CdiCd28DndCP | |
| 15350 | DNA sulfur modification protein DndD | |||
| 15345 | DNA phosphorothioation system sulfurtransferase | |||
| 15350 | M | M.Pdi9689DndDP (100% identity) | M.CdiCd28DndDP | |
| 15355 | DUF1832 domain-containing protein | |||
| 15350 | DNA sulfur modification protein DndD | |||
| 15355 | M | M.Pdi9689DndEP (100% identity) | M.CdiCd28DndEP | |
| 15360 | 1078 aa hypothetical protein | |||
| plasmid pCd28_2 | ||||
| 19545 | PD-(D/E)XK nuclease family protein | |||
| 19550 | M | M.CdiCd18ORF19465P (100% identity) | M.CdiCd28ORF19550P | |
| 19555 | Dam family site-specific | |||
| 19550 | site-specific DNA-methyltransferase | |||
| 19555 | M | M.Pph1296ORF60P (100% identity) | M.CdiCd28ORF19555P | |
| 19560 | 127 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10055 | AAA family ATPase | |||
| 10060 | R | Pdi9689McrCP (100% identity) | CdiCd28McrCP | |
| 10065 | R | Pdi9689McrBP (100% identity) | CdiCd28McrBP | |
| 10070 | cell division protein | |||