Helicobacter pylori 3401 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori 3401 RM systems
Ref: Matsuzaki,S. and Uesaka,K. unpublished
REBASE ref # 32546
Complete sequence: 1,591,853 bp
GenBank #: AP024599
REBASE acronym: Hpy3401
Org_num: 49935
All begin CPY3401_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5560 | polyphosphate kinase | |||
| 5570 | S | S.HpyMKF3ORF492P (98% identity) | CACNNNNNTC | S.Hpy3401ORF5580P |
| 5580 | M | M.HpyCHN2ORF2250P (97% identity) | CACNNNNNTC | M.Hpy3401ORF5580P |
| ??? | R | HpySG13ORF2210P (93% identity) | CACNNNNNTC | Hpy3401ORF5580P |
| 5610 | 631 aa hypothetical protein | |||
| 8980 | membrane protein | |||
| 8990 | S | S.Hpy3401ORF9570P (98% identity) | CTANNNNNNNNTTG | S.Hpy3401ORF8990P |
| 9000 | cadmium, zinc and cobalt-transporting ATPase | |||
| 9540 | hydroxyethylthiazole kinase | |||
| 9550 | R | HpyT029ORF2685P (97% identity) | CTANNNNNNNTTG | Hpy3401ORF9570P |
| 9560 | S | S.Hpy3401ORF8990P (98% identity) | CTANNNNNNNTTG | S.Hpy3401ORF9570P |
| 9570 | M | M.HpyF211ORF519P (97% identity) | CTANNNNNNNTTG | M.Hpy3401ORF9570P |
| 9580 | cytosine-specific methyltransferase | |||
| 15300 | 93 aa hypothetical protein | |||
| ??? | R | Hpyfe123ORF7730P (95% identity) | Hpy3401ORF15330P | |
| ??? | M | M.HpySW30ORF7345P (90% identity) | M.Hpy3401ORF15330P | |
| 15350 | 258 aa hypothetical protein | |||
| 15360 | S | S.HpyOK306ORFKP (91% identity) | S.Hpy3401ORF15330P | |
| 15370 | flavin-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 120 | 701 aa hypothetical protein | |||
| ??? | RM | HpyJ016ORF7295P (85% identity) | Hpy3401ORF130P | |
| 150 | 168 aa hypothetical protein | |||
| 290 | membrane protein | |||
| 300 | R | Hpy70ORF1462P (97% identity) | CCATC | Hpy3401ORF310P |
| 310 | M | M2.HpyTW25XI (51% identity) | M1.Hpy3401ORF310BP | |
| 320 | transposase | |||
| 330 | 213 aa hypothetical protein | |||
| 340 | M | M2.HpyUM111ORF3275P (30% identity) | M1.Hpy3401ORF310AP | |
| ??? | M | M2.Hpyfe88ORF155P (77% identity) | CCATC | M2.Hpy3401ORF310P |
| 360 | permease | |||
| 340 | 99 aa hypothetical protein | |||
| 350 | M | M2.Hpyfe71ORF135P (99% identity) | CCATC | M.Hpy3401ORF340P |
| 360 | permease | |||
| 610 | amidophosphoribosyltransferase | |||
| 620 | RM | HpyK99ORFJP (99% identity) | Hpy3401ORF620P | |
| 630 | S | S.HpyK049ORF7275P (45% identity) | S1.Hpy3401ORF620P | |
| 640 | S | S2.HpyPU001ORF7125P (98% identity) | S2.Hpy3401ORF620P | |
| 650 | DNA polymerase I | |||
| 1540 | agmatine deiminase | |||
| ??? | M | M1.HpyAs004XIV (98% identity) | CCTC | M1.Hpy3401ORF1550P |
| 1570 | M | M1.Hpyfe1ORF7000P (95% identity) | CCTC | M2.Hpy3401ORF1550P |
| 1580 | sodium/proline symporter | |||
| 2400 | 146 aa hypothetical protein | |||
| 2410 | M | M.HpyK037II (98% identity) | GATC | M.Hpy3401ORF2410P |
| 2420 | R | HpyOK305ORFTP (100% identity) | GATC | Hpy3401ORF2410P |
| 2430 | malonyl CoA-acyl carrier protein transacylase | |||
| 2970 | elongation factor P | |||
| 2980 | R | R1.HpyF228ORF2010P (97% identity) | R1.Hpy3401ORF2980P | |
| 2990 | R | R2.HpyJ002ORF985P (99% identity) | R2.Hpy3401ORF2980P | |
| 3000 | pseudaminic acid synthase | |||
| 3800 | exodeoxyribonuclease 7 large subunit | |||
| 3810 | M | M.HpyTN2ORF3270P (98% identity) | TCGA | M.Hpy3401ORF3810P |
| 3820 | 204 aa hypothetical protein | |||
| 3830 | 51 aa hypothetical protein | |||
| ??? | R | HpyOK305ORFAP (95% identity) | CCGG | Hpy3401ORF3860P |
| ??? | M | M.HpyGU82AORFAP (98% identity) | CCGG | M.Hpy3401ORF3860P |
| 3880 | chaperone protein ClpB | |||
| 4340 | peptidoglycan deacetylase | |||
| 4350 | R | HpyF228ORF3440P (99% identity) | Hpy3401ORF4360P | |
| 4360 | M | M.Hpybs3ORFJP (75% identity) | M.Hpy3401ORF4360P | |
| 4370 | 125 aa hypothetical protein | |||
| 5770 | membrane protein | |||
| 5780 | M | M.HpyF228ORFLP (98% identity) | ATTAAT | M.Hpy3401ORF5780P |
| 5790 | 282 aa hypothetical protein | |||
| 5800 | GTP-binding protein TypA/BipA | |||
| 5810 | M | M.HpyJ002VIII (95% identity) | ACNGT | M.Hpy3401ORF5810P |
| 5820 | R | HpyF228ORFEP (100% identity) | ACNGT | Hpy3401ORF5810P |
| 5830 | catalase-related peroxidase | |||
| 6020 | DNA gyrase subunit B | |||
| 6030 | M | M.HpyMKF10ORF897P (99% identity) | GTAC | M.Hpy3401ORF6030P |
| ??? | R | HpyMKF10ORF897P (98% identity) | GTAC | Hpy3401ORF6030P |
| 6060 | membrane protein | |||
| 7770 | membrane protein | |||
| ??? | RM | HpyK005ORF3505P (90% identity) | Hpy3401ORF7780P | |
| 7850 | glycolate oxidase iron-sulfur subunit | |||
| 9570 | type I restriction-modification system subunit | |||
| 9580 | M | M.Hpy9810ORF29P (100% identity) | M.Hpy3401ORF9580P | |
| ??? | R | Hpyfe54ORF3020P (97% identity) | Hpy3401ORF9580P | |
| 9610 | phosphatase PAP2 family protein | |||
| 10110 | flagellar basal body protein | |||
| ??? | R | HpyTW24XIVP (95% identity) | GTNNAC | Hpy3401ORFAP |
| ??? | M | M.HpyMKF8ORF913P (97% identity) | GTNNAC | M.Hpy3401ORFAP |
| 10130 | DNA helicase | |||
| 11540 | acetyl-CoA carboxylase biotin carboxylase | |||
| 11550 | M | M.Hpyfe60ORF2100P (99% identity) | TCNNGA | M.Hpy3401ORF11550P |
| 11560 | R | Hpy5ORF11370P (100% identity) | TCNNGA | Hpy3401ORF11550P |
| 11570 | 212 aa hypothetical protein | |||
| 11870 | 144 aa hypothetical protein | |||
| 11880 | M | M.HpyF221ORFQP (99% identity) | GCGC | M.Hpy3401ORF11880P |
| 11890 | 67 aa hypothetical protein | |||
| 12750 | hydrolase | |||
| 12760 | M | M.HpyF210ORF1198P (99% identity) | CATG | M.Hpy3401ORF12760P |
| ??? | R | HpyFD506ORFA1P (98% identity) | CATG | Hpy3401ORF12760P |
| 12780 | 56 aa hypothetical protein | |||
| 14110 | protease | |||
| 14120 | R | HpyF227ORFFP (93% identity) | GANTC | Hpy3401ORF14130P |
| 14130 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.Hpy3401ORF14130P |
| 14140 | DNA methyltransferase | |||
| 14130 | methyltransferase | |||
| 14140 | RM | HpyTW10ORF280P (91% identity) | Hpy3401ORF14140P | |
| 14150 | nicotinate-nucleotide pyrophosphorylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| 70 | M | M.HpyKH9ORFOP (38% identity) | M.Hpy3401ORF70AP | |
| 80 | transposase | |||
| 90 | 213 aa hypothetical protein | |||
| 100 | M | M.HpyK032ORF700P (31% identity) | M.Hpy3401ORF70BP | |
| 110 | R | HpyF210ORF1472P (98% identity) | Hpy3401ORF70P | |
| 120 | 701 aa hypothetical protein | |||
| 1280 | biotin synthase | |||
| 1290 | R | HpyF75ORF1330P (96% identity) | Hpy3401ORF1300P | |
| 1300 | M | M.HpyCA18ORF580P (96% identity) | M.Hpy3401ORF1300P | |
| 1310 | 86 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6140 | glutamine synthetase | |||
| 6150 | R | Hpy1838CGmrSD2P (91% identity) | Hpy3401GmrSDP | |
| 6160 | 50S ribosomal protein L9 | |||
| 7310 | 352 aa hypothetical protein | |||
| 7320 | R | HpyYN483GmrSD2P (96% identity) | Hpy3401GmrSD2P | |
| 7330 | NADPH quinone reductase MdaB | |||