Escherichia coli EC_J_9 |
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Putative Escherichia coli EC_J_9 RM systems
Ref: Liu,Z. unpublished
REBASE ref # 30474
| Sequence length: | GenBank #: | |
| Chromosome: | 4,948,775 bp | CP075062 |
| plasmid pCTX_J9_3: | 101,266 bp | CP075064 |
REBASE acronym: EcoECJ9
Org_num: 49783
All begin H4F96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4175 | transposase | |||
| 4180 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoECJ9ORF4185P |
| 4185 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoECJ9ORF4185P |
| 4190 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoECJ9ORF4185P |
| 4195 | AAA family ATPase | |||
| 14530 | transcription factor | |||
| 14535 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.EcoECJ9ORF14535P |
| 14540 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.EcoECJ9ORF14535P |
| 14545 | DUF4433 domain-containing protein | |||
| 14550 | macro domain-containing protein | |||
| 14555 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | EcoECJ9ORF14535P |
| 14560 | M48 family metallopeptidase | |||
| 20550 | 322 aa hypothetical protein | |||
| 20555 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | EcoECJ9ORF20560P |
| 20560 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoECJ9ORF20560P |
| 20565 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.EcoECJ9ORF20560P |
| 20570 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1680 | cell division protein DamX | |||
| 1685 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoECJ9DamP |
| 1690 | ribulose-phosphate 3-epimerase | |||
| 2210 | DUF2556 family protein | |||
| 2215 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoECJ9ORF2215P |
| 2220 | DNA-binding transcriptional regulator Fis | |||
| 3850 | osmoprotectant transport activator ProQ | |||
| 3855 | M | M.SflFF24DndBP (100% identity) | M.EcoECJ9DndBP | |
| 3860 | DNA phosphorothioation system sulfurtransferase | |||
| 3855 | DNA sulfur modification protein DndB | |||
| 3860 | M | M.SflFF24DndCP (99% identity) | M.EcoECJ9DndCP | |
| 3865 | DNA sulfur modification protein DndD | |||
| 3860 | DNA phosphorothioation system sulfurtransferase | |||
| 3865 | M | M.EcoDFL5DndDP (100% identity) | M.EcoECJ9DndDP | |
| 3870 | DNA sulfur modification protein DndE | |||
| 3865 | DNA sulfur modification protein DndD | |||
| 3870 | M | M.SflFF24DndEP (100% identity) | M.EcoECJ9DndEP | |
| 3875 | DGQHR domain-containing protein | |||
| 3885 | accessory gene regulator B family protein | |||
| 3890 | R | EcosEC5DptHP (100% identity) | EcoECJ9DptHP | |
| 3895 | DNA phosphorothioation-dependent restriction | |||
| 3895 | R | SflFF24DptGP (100% identity) | EcoECJ9DptGP | |
| 3900 | DNA phosphorothioation-dependent restriction | |||
| 3895 | DNA phosphorothioation-dependent restriction | |||
| 3900 | R | SflFF24DptFP (100% identity) | EcoECJ9DptFP | |
| 3905 | porin family protein | |||
| 9465 | phosphohydrolase | |||
| 9470 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoECJ9DcmP |
| 9475 | V | V.SflFF64DcmP (100% identity) | V.EcoECJ9DcmP | |
| 9480 | drug/metabolite exporter YedA | |||
| 16240 | phage lysis protein EssD | |||
| 16245 | M | M.EcofEC1ORF6600P (100% identity) | M.EcoECJ9ORF16245P | |
| 16250 | TrmB family transcriptional regulator | |||
| 16290 | NinE family protein | |||
| 16295 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoECJ9ORF16295P |
| 16300 | recombination protein NinB | |||
| 20780 | DUF3780 domain-containing protein | |||
| 20785 | M | M.EcofEC1ORF1985P (100% identity) | M.EcoECJ9ORF20785P | |
| 20790 | DEAD/DEAH box helicase family protein | |||
| plasmid pCTX_J9_3 | ||||
| 24870 | 97 aa hypothetical protein | |||
| 24875 | M | M.Xca80ORFEP (100% identity) | M.EcoECJ9ORF24875P | |
| 24880 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCTX_J9_3 | ||||
| 24740 | mobilization protein MobX | |||
| 24745 | R | SspS13ORF650P (100% identity) | EcoECJ9ORF24750P | |
| 24750 | M | M.SspS13ORF650P (100% identity) | M.EcoECJ9ORF24750P | |
| 24755 | 67 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8260 | recombinase family protein | |||
| 8265 | R | EcoS11GmrSDP (100% identity) | EcoECJ9GmrSD2P | |
| 8270 | DinI-like family protein | |||
| 20570 | endoribonuclease SymE | |||
| 20575 | R | Ecos673GmrDP (100% identity) | EcoECJ9GmrDP | |
| 20580 | R | SflN101GmrSP (100% identity) | EcoECJ9GmrSP | |
| 20585 | DUF1127 domain-containing protein | |||