Salmonella enterica subsp. enterica serovar Javiana CFSAN006218 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Javiana CFSAN006218 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
Complete sequence: 4,762,670 bp
GenBank #: CP074283
REBASE acronym: Sen6218
Org_num: 49020
All begin JYM76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19380 | restriction endonuclease | |||
| 19385 | R | Sen69835IIIP (100% identity) | CRTANNNNNNNGTCY | Sen6218ORF19390P |
| 19390 | M | M.Sen69835III (100% identity) | CRTANNNNNNNGTCY | M.Sen6218ORF19390P |
| 19395 | S | S.Sen69835III (100% identity) | CRTANNNNNNNGTCY | S.Sen6218ORF19390P |
| 19400 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1760 | cell division protein DamX | |||
| 1765 | M | M.StyTDamP (100% identity) | GATC | M.Sen6218DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2250 | DUF2556 family protein | |||
| 2255 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen6218ORF2255P |
| 2260 | DNA-binding transcriptional regulator Fis | |||
| 3150 | DUF3850 domain-containing protein | |||
| 3155 | M | M.CspNIH10ORF18435P (83% identity) | M.Sen6218ORF3155P | |
| 3160 | phosphoadenosine phosphosulfate reductase family | |||
| 5605 | IS30 family transposase | |||
| 5610 | R | Sen69835ORF5885P (100% identity) | GCCGGC | Sen6218ORF5615P |
| 5615 | M | M.SenCer87ORF1735P (100% identity) | GCCGGC | M.Sen6218ORF5615P |
| 5620 | phage tail tape measure protein | |||
| 13450 | drug/metabolite exporter YedA | |||
| 13455 | V | V.StyUK1DcmP (100% identity) | V.Sen6218DcmP | |
| 13460 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.Sen6218DcmP |
| 13465 | phosphohydrolase | |||
| 19520 | YebC/PmpR family DNA-binding transcriptional | |||
| 19525 | R | Sen69835ORF20565P (100% identity) | Sen6218ORF19525P | |
| 19530 | 59 aa hypothetical protein | |||
| 19775 | conjugal transfer protein TraG N-terminal | |||
| 19780 | M | M.Sen69835DndBP (100% identity) | M.Sen6218DndBP | |
| 19785 | DNA phosphorothioation system sulfurtransferase | |||
| 19780 | DNA sulfur modification protein DndB | |||
| 19785 | M | M.Sen69835DndCP (100% identity) | M.Sen6218DndCP | |
| 19790 | DNA sulfur modification protein DndD | |||
| 19785 | DNA phosphorothioation system sulfurtransferase | |||
| 19790 | M | M.Sen69835DndDP (100% identity) | M.Sen6218DndDP | |
| 19795 | DNA sulfur modification protein DndE | |||
| 19790 | DNA sulfur modification protein DndD | |||
| 19795 | M | M.Sen69835DndEP (100% identity) | M.Sen6218DndEP | |
| 19800 | DUF262 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17110 | 33 aa hypothetical protein | |||
| 17115 | R | Sen69835IP (100% identity) | CAGAG | Sen6218ORF17120P |
| 17120 | M | M.Sen69835I (100% identity) | CAGAG | M.Sen6218ORF17120P |
| 17125 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19375 | BrnT family toxin | |||
| 19380 | R | Sen69835MrrP (100% identity) | Sen6218MrrP | |
| 19385 | type I restriction-modification system | |||