Escherichia coli ATCC 98082 |
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Putative Escherichia coli ATCC 98082 RM systems
Ref: Yang,J. and Yang,S. unpublished
REBASE ref # 21584
| Sequence length: | GenBank #: | |
| Chromosome: | 4,613,541 bp | CP034658 |
| plasmid unnamed: | 454,520 bp | CP034659 |
REBASE acronym: Eco98082
Org_num: 47731
All begin EKH78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22045 | endoribonuclease SymE | |||
| 22050 | S | S.EcoXHORF13629P (100% identity) | AACNNNNNNGTGC | S.Eco98082ORF22055P |
| 22055 | M | M.EcoXHORF13629P (100% identity) | AACNNNNNNGTGC | M.Eco98082ORF22055P |
| 22060 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco98082ORF22055P |
| 22065 | Mrr restriction system protein | |||
| plasmid unnamed | ||||
| 22835 | M48 family peptidase | |||
| 22840 | R | Kpn1401ORF4490P (90% identity) | Eco98082ORF22840P | |
| 22845 | IS30-like element IS30 family transposase | |||
| 24625 | IS3-like element ISSen4 family transposase | |||
| 24630 | M | M.Kpn1401ORF4490P (94% identity) | GTAYNNNNNTTTA | M.Eco98082ORF24630P |
| 24635 | S | S.Kpn1401ORF4490P (100% identity) | GTAYNNNNNTTTA | S.Eco98082ORF24630P |
| 24640 | DUF262 domain-containing protein | |||
| 24750 | type II toxin-antitoxin system Phd/YefM family | |||
| 24755 | M | M.SspS13ORF175P (66% identity) | M.Eco98082ORF24770AP | |
| 24760 | IS5-like element IS903B family transposase | |||
| 24765 | PTS fructose IIA subunit | |||
| 24770 | M | M.SspS13ORF175P (34% identity) | M.Eco98082ORF24770BP | |
| 24775 | S | S.SspS13ORF175P (100% identity) | S.Eco98082ORF24770P | |
| 24780 | R | EcoXHORF21684P (100% identity) | Eco98082ORF24770P | |
| 24785 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9910 | drug/metabolite exporter YedA | |||
| 9915 | V | V.SflFF64DcmP (100% identity) | V.Eco98082DcmP | |
| 9920 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco98082DcmP |
| 9925 | phosphohydrolase | |||
| 16485 | DNA-binding transcriptional regulator Fis | |||
| 16490 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco98082ORF16490P |
| 16495 | DUF2556 domain-containing protein | |||
| 17115 | ribulose-phosphate 3-epimerase | |||
| 17120 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco98082DamP |
| 17125 | protein DamX | |||
| plasmid unnamed | ||||
| 23710 | 273 aa hypothetical protein | |||
| 23715 | M | M.Ype21801ORF197P (100% identity) | M.Eco98082ORF23715P | |
| 23720 | DNA-binding protein | |||
| 24215 | thermonuclease family protein | |||
| ??? | M | M.SenFC745ORF23370P (100% identity) | M.Eco98082ORF24220P | |
| 24225 | 56 aa hypothetical protein | |||
| 24915 | 61 aa hypothetical protein | |||
| 24930 | M | M.Eco87310ORF25365P (99% identity) | M.Eco98082ORF24930P | |
| 24935 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5685 | recombinase family protein | |||
| 5690 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco98082ORF5690P |
| 5695 | isocitrate dehydrogenase | |||
| 22030 | 906 aa hypothetical protein | |||
| 22035 | R | EcoXHMcrCP (100% identity) | Eco98082McrCP | |
| 22040 | R | SenHNK130McrBP (100% identity) | Eco98082McrBP | |
| 22045 | endoribonuclease SymE | |||
| 22060 | type I restriction-modification system | |||
| 22065 | R | SenHNK130MrrP (100% identity) | Eco98082MrrP | |
| 22070 | GTPase | |||