Escherichia coli tcmA_3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli tcmA_3 RM systems
Ref: Liu,Z. and Chen,P. unpublished
REBASE ref # 31984
| Sequence length: | GenBank #: | |
| Chromosome: | 5,081,811 bp | CP059835 |
| plasmid pCTX_A3_3: | 133,615 bp | CP059837 |
| plasmid pMCR_A3_2: | 267,184 bp | CP059836 |
REBASE acronym: EcotcmA3
Org_num: 47735
All begin GQF93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9800 | restriction endonuclease subunit M | |||
| 9805 | M | M.EcoPSS15ORF42120P (100% identity) | M.EcotcmA3ORF9805P | |
| 9810 | S | S.EcoPSS15ORF42120P (100% identity) | S.EcotcmA3ORF9805P | |
| 9815 | R | EcoPSS15ORF42120P (100% identity) | EcotcmA3ORF9805P | |
| 9825 | NADPH-dependent aldehyde reductase Ahr | |||
| 16545 | helix-turn-helix domain-containing protein | |||
| 16550 | M | M.Pre393ORF2750P (100% identity) | M.EcotcmA3ORF16550P | |
| 16555 | S | S.Ecos119ORF22560P (100% identity) | S.EcotcmA3ORF16550P | |
| 16560 | RecQ family ATP-dependent DNA helicase | |||
| 16565 | DNA-processing protein DprA | |||
| 16570 | R | Ecos119ORF22560P (100% identity) | EcotcmA3ORF16550P | |
| 16575 | IS3-like element ISSen4 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4325 | type II toxin-antitoxin system RelE/ParE family | |||
| 4330 | M | M.Econumer3ORFFP (95% identity) | M.EcotcmA3ORF4330P | |
| 4335 | TrmB family transcriptional regulator | |||
| 9775 | HNH endonuclease | |||
| 9780 | R | EcoSC492ORFAP (100% identity) | EcotcmA3ORF9780P | |
| 9785 | McrC family protein | |||
| 10550 | porin family protein | |||
| 10555 | R | SflFF24DptFP (100% identity) | EcotcmA3DptFP | |
| 10560 | DNA phosphorothioation-dependent restriction | |||
| 10555 | DNA phosphorothioation-dependent restriction | |||
| 10560 | R | SflFF24DptGP (100% identity) | EcotcmA3DptGP | |
| 10560 | DNA phosphorothioation-dependent restriction | |||
| 10565 | R | EcoWH398DptHP (100% identity) | EcotcmA3DptHP | |
| 10570 | accessory gene regulator B family protein | |||
| 10590 | 197 aa hypothetical protein | |||
| 10595 | M | M.SflFF24DndEP (100% identity) | M.EcotcmA3DndEP | |
| 10600 | DNA sulfur modification protein DndD | |||
| 10600 | DNA sulfur modification protein DndD | |||
| 10605 | M | M.SflFF24DndCP (100% identity) | M.EcotcmA3DndCP | |
| 10610 | DNA sulfur modification protein DndB | |||
| 10605 | DNA phosphorothioation system sulfurtransferase | |||
| 10610 | M | M.SflFF24DndBP (100% identity) | M.EcotcmA3DndBP | |
| 10615 | osmoprotectant transport activator ProQ | |||
| 12405 | DNA-binding transcriptional regulator Fis | |||
| 12410 | M | M.EcosA19ORF2650P (100% identity) | ATGCAT | M.EcotcmA3ORF12410P |
| 12415 | DUF2556 family protein | |||
| 12965 | ribulose-phosphate 3-epimerase | |||
| 12970 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcotcmA3DamP |
| 12975 | cell division protein DamX | |||
| 17485 | osmoprotectant transport activator ProQ | |||
| ??? | M | M.SflFF24DndBP (92% identity) | M.EcotcmA3DndB2P | |
| 17495 | DNA phosphorothioation system sulfurtransferase | |||
| ??? | DNA sulfur modification protein DndB | |||
| 17495 | M | M.Eco9591DndCP (85% identity) | M.EcotcmA3DndC2P | |
| 17500 | DNA sulfur modification protein DndD | |||
| 17495 | DNA phosphorothioation system sulfurtransferase | |||
| 17500 | M | M.SflFF24DndDP (86% identity) | M.EcotcmA3DndD2P | |
| 17505 | DndE family protein | |||
| 17525 | DNA phosphorothioation-dependent restriction | |||
| 17530 | R | SflFF24DptGP (88% identity) | EcotcmA3DptG2P | |
| 17535 | DNA phosphorothioation-dependent restriction | |||
| 19520 | TrmB family transcriptional regulator | |||
| 19525 | M | M.EcoPSS15ORF11910P (100% identity) | M.EcotcmA3ORF19525P | |
| 19540 | holin | |||
| 19720 | TraR/DksA family transcriptional regulator | |||
| 19725 | M | M.EcoF829ORF28100P (100% identity) | GATC | M.EcotcmA3ORF19725P |
| 19730 | replication endonuclease | |||
| 23255 | phosphohydrolase | |||
| 23260 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcotcmA3DcmP |
| 23265 | V | V.SsoSE61DcmP (100% identity) | V.EcotcmA3DcmP | |
| 23270 | drug/metabolite exporter YedA | |||
| 24710 | TrmB family transcriptional regulator | |||
| 24715 | M | M.EcoM1881ORF10220P (98% identity) | M.EcotcmA3ORF24715P | |
| 24730 | 96 aa hypothetical protein | |||
| plasmid pCTX_A3_3 | ||||
| 26320 | 73 aa hypothetical protein | |||
| 26325 | M | M.StyR64ORFAP (100% identity) | M.EcotcmA3ORF26325P | |
| 26330 | 103 aa hypothetical protein | |||
| plasmid pMCR_A3_2 | ||||
| 25065 | thermonuclease family protein | |||
| 25070 | M | M.YpsF1ORFCP (100% identity) | M.EcotcmA3ORF25070P | |
| 25075 | 55 aa hypothetical protein | |||
| 25710 | 48 aa hypothetical protein | |||
| 25715 | M | M.YpsF1ORFBP (100% identity) | M.EcotcmA3ORF25715P | |
| 25720 | 202 aa hypothetical protein | |||
| 25835 | DNA-binding protein | |||
| 25840 | M | M.YpsF1ORFDP (100% identity) | M.EcotcmA3ORF25840P | |
| 25845 | 277 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9780 | HNH endonuclease | |||
| 9785 | R | SdyFF10McrCP (100% identity) | EcotcmA3McrCP | |
| 9790 | R | SflSTLE4McrBP (100% identity) | EcotcmA3McrBP | |
| 9795 | IS3-like element IS3 family transposase | |||