Escherichia coli EC31 |
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Putative Escherichia coli EC31 RM systems
Ref: Liu,F. et al. unpublished
REBASE ref # 31821
| Sequence length: | GenBank #: | |
| Chromosome: | 5,219,265 bp | CP056036 |
| plasmid pEC31-2: | 66,150 bp | CP056038 |
REBASE acronym: EcoEC31
Org_num: 46552
All begin HUW39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3535 | IS5-like element ISKpn26 family transposase | |||
| 3540 | R | EcoE35ORF3525P (100% identity) | CACNNNNNNTCC | EcoEC31ORF3550P |
| 3545 | S | S.EcoTHO010ORF28970P (100% identity) | CACNNNNNNTCC | S.EcoEC31ORF3550P |
| 3550 | M | M.EcoTHO010ORF28970P (100% identity) | CACNNNNNNTCC | M.EcoEC31ORF3550P |
| 3555 | GTPase family protein | |||
| 21570 | adenine/cytosine-specific restriction | |||
| 21575 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoEC31ORF21580P |
| 21580 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoEC31ORF21580P |
| 21585 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoEC31ORF21580P |
| 21590 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1875 | cell division protein DamX | |||
| 1880 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoEC31DamP |
| 1885 | ribulose-phosphate 3-epimerase | |||
| 2405 | DUF2556 family protein | |||
| 2410 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoEC31ORF2410P |
| 2415 | DNA-binding transcriptional regulator Fis | |||
| 10275 | phosphohydrolase | |||
| 10280 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoEC31DcmP |
| 10285 | V | V.Ecostr9DcmP (74% identity) | V.EcoEC31DcmP | |
| 10290 | drug/metabolite exporter YedA | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEC31-2 | ||||
| 25635 | 67 aa hypothetical protein | |||
| 25640 | M | M.SspS13ORF650P (100% identity) | M.EcoEC31ORF25640P | |
| 25645 | R | SspS13ORF650P (100% identity) | EcoEC31ORF25640P | |
| 25650 | mobilization protein MobX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21565 | GTPase | |||
| 21570 | R | Ssp28760MrrP (100% identity) | EcoEC31MrrP | |
| 21575 | type I restriction-modification system | |||
| 21590 | endoribonuclease SymE | |||
| 21595 | R | SenHNK130McrBP (100% identity) | EcoEC31McrBP | |
| 21600 | R | SenHNK130McrCP (100% identity) | EcoEC31McrCP | |